The microbial rare biosphere: current concepts, methods and ecological principles

F Pascoal, R Costa, C Magalhães - FEMS Microbiology Ecology, 2021 - academic.oup.com
Our ability to describe the highly diverse pool of low abundance populations present in
natural microbial communities is increasing at an unprecedented pace. Yet we currently lack …

The regulatory function of Blastocystis spp. on the immune inflammatory response in the gut microbiome

L Rojas-Velázquez, P Morán… - Frontiers in Cellular …, 2022 - frontiersin.org
Blastocystis spp. is a unicellular organism that resides in digestive tract of various
vertebrates, with a worldwide distribution and a variable prevalence. For many years …

A predatory myxobacterium controls cucumber Fusarium wilt by regulating the soil microbial community

X Ye, Z Li, X Luo, W Wang, Y Li, R Li, B Zhang, Y Qiao… - Microbiome, 2020 - Springer
Background Myxobacteria are micropredators in the soil ecosystem with the capacity to
move and feed cooperatively. Some myxobacterial strains have been used to control soil …

Nematode predation and competitive interactions affect microbe-mediated phosphorus dynamics

J Zheng, F Dini-Andreote, L Luan, S Geisen, J Xue… - MBio, 2022 - Am Soc Microbiol
Nematode predation plays an essential role in determining changes in the rhizosphere
microbiome. These changes affect the local nutrient balance and cycling of essential …

Hydrocarbon removal by two differently developed microbial inoculants and comparing their actions with biostimulation treatment

J Brzeszcz, P Kapusta, T Steliga, A Turkiewicz - Molecules, 2020 - mdpi.com
Bioremediation of soils polluted with petroleum compounds is a widely accepted
environmental technology. We compared the effects of biostimulation and bioaugmentation …

Bacterial keystone taxa regulate carbon metabolism in the earthworm gut

G Zhu, O Schmidt, L Luan, J Xue, J Fan… - Microbiology …, 2022 - Am Soc Microbiol
As important ecosystem engineers in soils, earthworms strongly influence carbon cycling
through their burrowing and feeding activities. Earthworms do not perform these roles in …

Elevated antimony concentration stimulates rare taxa of potential autotrophic bacteria in the Xikuangshan groundwater

W Wang, X Cheng, Y Song, H Wang, M Wu… - Science of The Total …, 2023 - Elsevier
Microbial communities composed of few abundant and many rare species are widely
involved in the biogeochemical cycles of elements. Yet little is known about the ecological …

Unravelling the interplay of ecological processes structuring the bacterial rare biosphere

X Jia, F Dini-Andreote, JF Salles - ISME communications, 2022 - academic.oup.com
Most ecological communities harbor many rare species (ie, the rare biosphere), however,
relatively little is known about how distinct ecological processes structure their existence …

Effect of protists on rhizobacterial community composition and rice plant growth in a biochar amended soil

R Asiloglu, B Sevilir, SO Samuel, M Aycan… - Biology and Fertility of …, 2021 - Springer
The effects of protists on an indigenous soil bacterial community, putative bacterial genes
involved in N-cycling, and the rice plant growth were studied in poultry litter biochar (PL) and …

Forest-to-Cropland Conversion Reshapes Microbial Hierarchical Interactions and Degrades Ecosystem Multifunctionality at a National Scale

LJ Ding, XY Ren, ZZ Zhou, D Zhu… - Environmental Science & …, 2024 - ACS Publications
Conversion from natural lands to cropland, primarily driven by agricultural expansion, could
significantly alter soil microbiome worldwide; however, influences of forest-to-cropland …