Scientific software is a fundamental player in modern science, participating in all stages of
scientific knowledge production. Software occasionally supports the development of trivial …

In scientific research, the method is an indispensable means to solve scientific problems and
a critical research object. With the advancement of sciences, many scientific methods are …

Science across all disciplines has become increasingly data-driven, leading to additional
needs with respect to software for collecting, processing and analysing data. Thus …

We describe the CZ Software Mentions dataset, a new dataset of software mentions in
biomedical papers. Plain-text software mentions are extracted with a trained SciBERT model …

Knowledge about software used in scientific investigations is important for several reasons,
for instance, to enable an understanding of provenance and methods involved in data …

Motivation Software is vital for the advancement of biology and medicine. Impact evaluations
of scientific software have primarily emphasized traditional citation metrics of associated …

In this paper, we investigate progress toward improved software citation by examining
current software citation practices. We first introduce our machine learning based data …

Many of the most commonly explored natural language processing (NLP) information
extraction tasks can be thought of as evaluations of declarative knowledge, or fact-based …

While computer science papers frequently include their associated code repositories,
establishing a clear link between papers and their corresponding implementations may be …

We present a comprehensive information extraction system dedicated to software entities in
scientific literature. This task combines the complexity of automatic reading of scientific …