Advanced genomics-based approaches for defining allograft rejection with single cell resolution

T Shi, K Roskin, BM Baker, ES Woodle… - Frontiers in …, 2021 - frontiersin.org
Solid organ transplant recipients require long-term immunosuppression for prevention of
rejection. Calcineurin inhibitor (CNI)-based immunosuppressive regimens have remained …

Standardization and interpretation of RNA-sequencing for transplantation

G Thareja, H Suryawanshi, X Luo… - Transplantation, 2023 - journals.lww.com
Abstract RNA-sequencing (RNA-seq) is a technique to determine the order of nucleotides in
an RNA segment. Modern sequencing platforms simultaneously sequence millions of RNA …

[HTML][HTML] Landscape of innate immune system transcriptome and acute T cell–mediated rejection of human kidney allografts

FB Mueller, H Yang, M Lubetzky, A Verma, JR Lee… - JCI insight, 2019 - ncbi.nlm.nih.gov
Acute rejection of human allografts has been viewed mostly through the lens of adaptive
immunity, and the intragraft landscape of innate immunity genes has not been characterized …

Dissecting the human kidney allograft transcriptome: single-cell RNA sequencing

E Varma, X Luo, T Muthukumar - Current Opinion in Organ …, 2021 - journals.lww.com
Dissecting the human kidney allograft transcriptome: single-... : Current Opinion in Organ
Transplantation Dissecting the human kidney allograft transcriptome: single-cell RNA …

Technical considerations when designing a gene expression panel for renal transplant diagnosis

F Toulza, K Dominy, T Cook, J Galliford, J Beadle… - Scientific Reports, 2020 - nature.com
Gene expression analysis is emerging as a new diagnostic tool in transplant pathology, in
particular for the diagnosis of antibody-mediated rejection. Diagnostic gene expression …

Advances in single-cell sequencing: insights from organ transplantation

Y Wang, JY Wang, A Schnieke, K Fischer - Military Medical Research, 2021 - Springer
Single-cell RNA sequencing (scRNA-seq) is a comprehensive technical tool to analyze
intracellular and intercellular interaction data by whole transcriptional profile analysis. Here …

Single Cell Sequencing and Spatial Transcriptomics in Kidney Transplantation

RS Paul, C Atkinson, AF Malone - Current Transplantation Reports, 2024 - Springer
Abstract Purpose of Review Progress in biology and medicine relies on technological
advances. The ability to examine gene expression from single cells in tissues with complex …

Applications of Transcriptomics in the Research of Antibody-Mediated Rejection in Kidney Transplantation: Progress and Perspectives

H Yeh - Organogenesis, 2022 - Taylor & Francis
Antibody-mediated rejection (ABMR) is the major cause of chronic allograft dysfunction and
loss in kidney transplantation. The immunological mechanisms of ABMR that have been …

[HTML][HTML] Single cell immune profiling in transplantation research

LE Higdon, S Schaffert, P Khatri… - American Journal of …, 2019 - Elsevier
Recently developed single-cell profiling technologies hold promise to provide new insights
including analysis of population heterogeneity and linkage of antigen receptors with gene …

Allograft tissue under the microscope: only the beginning

S Virmani, A Rao, MC Menon - Current opinion in organ …, 2023 - journals.lww.com
Banff Schema of classification of allograft histology has standardized reporting of tissue
pathology internationally greatly impacting clinical care and research. Inherent sampling …