Tandem repeats lead to sequence assembly errors and impose multi-level challenges for genome and protein databases

OK Tørresen, B Star, P Mier… - Nucleic acids …, 2019 - academic.oup.com
The widespread occurrence of repetitive stretches of DNA in genomes of organisms across
the tree of life imposes fundamental challenges for sequencing, genome assembly, and …

Ice-binding proteins: a remarkable diversity of structures for stopping and starting ice growth

PL Davies - Trends in biochemical sciences, 2014 - cell.com
Antifreeze proteins (AFPs) were discovered in marine fishes that need protection from
freezing. These ice-binding proteins (IBPs) are widespread across biological kingdoms, and …

Ice-binding proteins and their function

M Bar Dolev, I Braslavsky… - Annual review of …, 2016 - annualreviews.org
Ice-binding proteins (IBPs) are a diverse class of proteins that assist organism survival in the
presence of ice in cold climates. They have different origins in many organisms, including …

Ice-nucleating bacteria control the order and dynamics of interfacial water

R Pandey, K Usui, RA Livingstone, SA Fischer… - Science …, 2016 - science.org
Ice-nucleating organisms play important roles in the environment. With their ability to induce
ice formation at temperatures just below the ice melting point, bacteria such as …

Anti freeze proteins (Afp): Properties, sources and applications–A review

A Baskaran, M Kaari, G Venugopal, R Manikkam… - International Journal of …, 2021 - Elsevier
Extreme cold marine and freshwater temperatures (below 4° C) induce massive
deterioration to the cell membranes of organisms resulting in the formation of ice crystals …

The properties, biotechnologies, and applications of antifreeze proteins

H Xiang, X Yang, L Ke, Y Hu - International journal of biological …, 2020 - Elsevier
By natural selection, organisms evolve different solutions to cope with extremely cold
weather. The emergence of an antifreeze protein gene is one of the most momentous …

From input to output: the Lap/c-di-GMP biofilm regulatory circuit

AJ Collins, TJ Smith, H Sondermann… - Annual review of …, 2020 - annualreviews.org
Biofilms are the dominant bacterial lifestyle. The regulation of the formation and dispersal of
bacterial biofilms has been the subject of study in many organisms. Over the last two …

[HTML][HTML] Ice-binding proteins in plants

M Bredow, VK Walker - Frontiers in plant science, 2017 - frontiersin.org
Sub-zero temperatures put plants at risk of damage associated with the formation of ice
crystals in the apoplast. Some freeze-tolerant plants mitigate this risk by expressing ice …

Structure of a 1.5-MDa adhesin that binds its Antarctic bacterium to diatoms and ice

S Guo, CA Stevens, TDR Vance, LLC Olijve… - Science …, 2017 - science.org
Bacterial adhesins are modular cell-surface proteins that mediate adherence to other cells,
surfaces, and ligands. The Antarctic bacterium Marinomonas primoryensis uses a 1.5-MDa …

Bacterial ice crystal controlling proteins

JSH Lorv, DR Rose, BR Glick - Scientifica, 2014 - Wiley Online Library
Across the world, many ice active bacteria utilize ice crystal controlling proteins for aid in
freezing tolerance at subzero temperatures. Ice crystal controlling proteins include both …