Third-generation sequencing in the clinical laboratory: exploring the advantages and challenges of nanopore sequencing

LM Petersen, IW Martin, WE Moschetti… - Journal of clinical …, 2019 - Am Soc Microbiol
Metagenomic sequencing for infectious disease diagnostics is an important tool that holds
promise for use in the clinical laboratory. Challenges for implementation so far include high …

Lyme disease in humans

JD Radolf, K Strle, JE Lemieux, F Strle - Current issues in molecular …, 2021 - mdpi.com
Lyme disease (Lyme borreliosis) is a tick-borne, zoonosis of adults and children caused by
genospecies of the Borrelia burgdorferi sensu lato complex. The ailment, widespread …

Kaptive Web: user-friendly capsule and lipopolysaccharide serotype prediction for Klebsiella genomes

RR Wick, E Heinz, KE Holt… - Journal of clinical …, 2018 - Am Soc Microbiol
As whole-genome sequencing becomes an established component of the microbiologist's
toolbox, it is imperative that researchers, clinical microbiologists, and public health …

Competition between skin antimicrobial peptides and commensal bacteria in type 2 inflammation enables survival of S. aureus

T Nakatsuji, SL Brinton, KJ Cavagnero, AM O'Neill… - Cell reports, 2023 - cell.com
During inflammation, the skin deploys antimicrobial peptides (AMPs) yet during allergic
inflammation it becomes more susceptible to Staphylococcus aureus. To understand this …

RhlR-regulated acyl-homoserine lactone quorum sensing in a cystic fibrosis isolate of Pseudomonas aeruginosa

RL Cruz, KL Asfahl, S Van den Bossche, T Coenye… - MBio, 2020 - Am Soc Microbiol
The opportunistic pathogen Pseudomonas aeruginosa is a leading cause of airway infection
in cystic fibrosis (CF) patients. P. aeruginosa employs several hierarchically arranged and …

Characterization and demonstration of mock communities as control reagents for accurate human microbiome community measurements

DM Tourlousse, K Narita, T Miura, A Ohashi… - Microbiology …, 2022 - Am Soc Microbiol
Standardization and quality assurance of microbiome community analysis by high-
throughput DNA sequencing require widely accessible and well-characterized reference …

F plasmids are the major carriers of antibiotic resistance genes in human-associated commensal Escherichia coli

C Stephens, T Arismendi, M Wright, A Hartman… - Msphere, 2020 - Am Soc Microbiol
The evolution and propagation of antibiotic resistance by bacterial pathogens are significant
threats to global public health. Contemporary DNA sequencing tools were applied here to …

Mechanisms of IS26-Mediated Amplification of the aphA1 Gene Leading to Tobramycin Resistance in an Acinetobacter baumannii Isolate

CJ Harmer, F Lebreton, J Stam, PT McGann… - Microbiology …, 2022 - Am Soc Microbiol
Enhanced levels of resistance to antibiotics arising from amplification of an antibiotic
resistance gene that impact therapeutic options are increasingly observed. Amplification can …

Direct RNA nanopore sequencing of Pseudomonas aeruginosa clone C transcriptomes

MM Pust, CF Davenport, L Wiehlmann… - Journal of …, 2022 - Am Soc Microbiol
The transcriptomes of Pseudomonas aeruginosa clone C isolates NN2 and SG17M during
the mid-exponential and early stationary phases of planktonic growth were evaluated by …

Genomic Epidemiology of Complex, Multispecies, Plasmid-Borne blaKPC Carbapenemase in Enterobacterales in the United Kingdom from 2009 to 2014

N Stoesser, HTT Phan, AC Seale, Z Aiken… - Antimicrobial agents …, 2020 - Am Soc Microbiol
Carbapenem resistance in Enterobacterales is a public health threat. Klebsiella
pneumoniae carbapenemase (encoded by alleles of the bla KPC family) is one of the most …