[PDF][PDF] That's so annoying!!!: A lexical and frame-semantic embedding based data augmentation approach to automatic categorization of annoying behaviors using# …

WY Wang, D Yang - Proceedings of the 2015 conference on …, 2015 - aclanthology.org
We propose a novel data augmentation approach to enhance computational behavioral
analysis using social media text. In particular, we collect a Twitter corpus of the descriptions …

Production of biofuels and biochemicals: in need of an ORACLE

L Miskovic, V Hatzimanikatis - Trends in biotechnology, 2010 - cell.com
The engineering of cells for the production of fuels and chemicals involves simultaneous
optimization of multiple objectives, such as specific productivity, extended substrate range …

Unraveling human complexity and disease with systems biology and personalized medicine

S Naylor, JY Chen - Personalized medicine, 2010 - Taylor & Francis
We are all perplexed that current medical practice often appears maladroit in curing our
individual illnesses or disease. However, as is often the case, a lack of understanding, tools …

Protein-protein docking using region-based 3D Zernike descriptors

V Venkatraman, YD Yang, L Sael, D Kihara - BMC bioinformatics, 2009 - Springer
Background Protein-protein interactions are a pivotal component of many biological
processes and mediate a variety of functions. Knowing the tertiary structure of a protein …

A machine learning approach for identification of malignant mesothelioma etiological factors in an imbalanced dataset

TM Alam, K Shaukat, H Mahboob… - The Computer …, 2022 - academic.oup.com
In today's world, lung cancer is a significant health burden, and it is one of the most leading
causes of death. A leading type of lung cancer is malignant mesothelioma (MM). Most of the …

Patric: a parallel algorithm for counting triangles in massive networks

S Arifuzzaman, M Khan, M Marathe - Proceedings of the 22nd ACM …, 2013 - dl.acm.org
Massive networks arising in numerous application areas poses significant challenges for
network analysts as these networks grow to billions of nodes and are prohibitively large to fit …

From network models to network responses: integration of thermodynamic and kinetic properties of yeast genome-scale metabolic networks

KC Soh, L Miskovic, V Hatzimanikatis - FEMS yeast research, 2012 - academic.oup.com
Many important problems in cell biology arise from the dense nonlinear interactions
between functional modules. The importance of mathematical modelling and computer …

Detecting local ligand‐binding site similarity in nonhomologous proteins by surface patch comparison

L Sael, D Kihara - Proteins: Structure, Function, and …, 2012 - Wiley Online Library
Functional elucidation of proteins is one of the essential tasks in biology. Function of a
protein, specifically, small ligand molecules that bind to a protein, can be predicted by …

A design–build–test cycle using modeling and experiments reveals interdependencies between upper glycolysis and xylose uptake in recombinant S. cerevisiae and …

L Miskovic, S Alff-Tuomala, KC Soh, D Barth… - Biotechnology for …, 2017 - Springer
Background Recent advancements in omics measurement technologies have led to an ever-
increasing amount of available experimental data that necessitate systems-oriented …

Real‐time ligand binding pocket database search using local surface descriptors

R Chikhi, L Sael, D Kihara - Proteins: Structure, Function, and …, 2010 - Wiley Online Library
Because of the increasing number of structures of unknown function accumulated by
ongoing structural genomics projects, there is an urgent need for computational methods for …