Reaction coordinates and mechanistic hypothesis tests

B Peters - Annual review of physical chemistry, 2016 - annualreviews.org
Reaction coordinates are integral to several classic rate theories that can (a) predict kinetic
trends across conditions and homologous reactions,(b) extract activation parameters with a …

Rate theories for biologists

HX Zhou - Quarterly reviews of biophysics, 2010 - cambridge.org
Some of the rate theories that are most useful for modeling biological processes are
reviewed. By delving into some of the details and subtleties in the development of the …

Current status of transition-state theory

DG Truhlar, BC Garrett… - The Journal of physical …, 1996 - ACS Publications
We present an overview of the current status of transition-state theory and its
generalizations. We emphasize (i) recent improvements in available methodology for …

Reaction rate theory: What it was, where is it today, and where is it going?

E Pollak, P Talkner - Chaos: An Interdisciplinary Journal of Nonlinear …, 2005 - pubs.aip.org
A brief history is presented, outlining the development of rate theory during the past century.
Starting from Arrhenius [Z. Phys. Chem. 4, 226 (1889)], we follow especially the formulation …

Quantum rates for a double well coupled to a dissipative bath: Accurate path integral results and comparison with approximate theories

M Topaler, N Makri - The Journal of chemical physics, 1994 - pubs.aip.org
We present accurate fully quantum calculations of thermal rate constants for a symmetric
double well system coupled to a dissipative bath. The calculations are performed using the …

One-dimensional reaction coordinates for diffusive activated rate processes in many dimensions

A Berezhkovskii, A Szabo - The Journal of chemical physics, 2005 - pubs.aip.org
The introduction of a low dimensional description is an important first step towards
understanding the dynamics of complex systems. When can a multidimensional activated …

Microscopic theory of protein folding rates. II. Local reaction coordinates and chain dynamics

JJ Portman, S Takada, PG Wolynes - The Journal of Chemical Physics, 2001 - pubs.aip.org
A complete description of protein folding kinetics must account for the microscopic dynamics
of the polypeptide chain. The relaxation of a free polymer is well described by Langevin …

Kramers problem in periodic potentials: Jump rate and jump lengths

R Ferrando, R Spadacini, GE Tommei - Physical Review E, 1993 - APS
The Kramers problem in periodic potentials is solved separating the intrawell and interwell
dynamics. Both the jump rate and the probability distribution of the jump lengths are …

Transition state dynamics and relaxation processes in solutions: a frontier of physical chemistry

GA Voth, RM Hochstrasser - The Journal of Physical Chemistry, 1996 - ACS Publications
The theoretical framework for describing solvent effects on solution phase reactions is
summarized. When possible, the results are related to experiments involving geometric …

Perspective: Insight into reaction coordinates and dynamics from the potential energy landscape

DJ Wales - The Journal of chemical physics, 2015 - pubs.aip.org
This perspective focuses on conceptual and computational aspects of the potential energy
landscape framework. It has two objectives: first to summarise some key developments of …