STrengthening the REporting of Genetic Association Studies (STREGA)—an extension of the STROBE statement

J Little, JPT Higgins, JPA Ioannidis… - … Official Publication of …, 2009 - Wiley Online Library
Making sense of rapidly evolving evidence on genetic associations is crucial to making
genuine advances in human genomics and the eventual integration of this information in the …

Genotyping errors: causes, consequences and solutions

F Pompanon, A Bonin, E Bellemain… - Nature Reviews …, 2005 - nature.com
Although genotyping errors affect most data and can markedly influence the biological
conclusions of a study, they are too often neglected. Errors have various causes, but their …

Testing for Hardy–Weinberg proportions: have we lost the plot?

RS Waples - Journal of heredity, 2015 - academic.oup.com
Abstract Testing for Hardy–Weinberg proportions (HWP) is routine in almost all genetic
studies of natural populations, but many researchers do not demonstrate a full …

Linkage disequilibrium estimates of contemporary Ne using highly variable genetic markers: a largely untapped resource for applied conservation and evolution

RS Waples, CHI Do - Evolutionary applications, 2010 - Wiley Online Library
Genetic methods are routinely used to estimate contemporary effective population size (Ne)
in natural populations, but the vast majority of applications have used only the temporal (two …

How to track and assess genotyping errors in population genetics studies

A Bonin, E Bellemain, P Bronken Eidesen… - Molecular …, 2004 - Wiley Online Library
Genotyping errors occur when the genotype determined after molecular analysis does not
correspond to the real genotype of the individual under consideration. Virtually every genetic …

A bias correction for estimates of effective population size based on linkage disequilibrium at unlinked gene loci

RS Waples - Conservation Genetics, 2006 - Springer
Abstract Analysis of linkage disequilibrium (̂ r^ 2= mean squared correlation of allele
frequencies at different gene loci) provides a means of estimating effective population size …

Interrogating a high-density SNP map for signatures of natural selection

JM Akey, G Zhang, K Zhang, L Jin… - Genome research, 2002 - genome.cshlp.org
Identifying genomic regions that have been targets of natural selection remains one of the
most important and challenging areas of research in genetics. To this end, we report an …

Association genetics of complex traits in plants

PK Ingvarsson, NR Street - New Phytologist, 2011 - Wiley Online Library
Association mapping is rapidly becoming the main method for dissecting the genetic
architecture of complex traits in plants. Currently most association mapping studies in plants …

Power of multifactor dimensionality reduction for detecting gene‐gene interactions in the presence of genotyping error, missing data, phenocopy, and genetic …

MD Ritchie, LW Hahn, JH Moore - Genetic Epidemiology: The …, 2003 - Wiley Online Library
The identification and characterization of genes that influence the risk of common, complex
multifactorial diseases, primarily through interactions with other genes and other …

Detection of genotyping errors by Hardy–Weinberg equilibrium testing

L Hosking, S Lumsden, K Lewis, A Yeo… - European Journal of …, 2004 - nature.com
Genotyping data sets may contain errors that, in some instances, lead to false conclusions.
Deviation from Hardy–Weinberg equilibrium (HWE) in random samples may be indicative of …