Stochastic resonance in a model of a periodically driven DNA: Multiple transitions, scaling, and sequence dependence

RK Yadav, MS Kalyan, R Kapri, A Chaudhuri - Physical Review E, 2023 - APS
We numerically study stochastic resonance in the unzipping of a model double-stranded
DNA by a periodic force. We observe multiple peaks in stochastic resonance in the output …

Unzipping of a double-stranded block copolymer DNA by a periodic force

RK Yadav, R Kapri - Physical Review E, 2021 - APS
Using Monte Carlo simulations, we study the hysteresis in unzipping of a double-stranded
block copolymer DNA with− A n B n− repeat units. Here A and B represent two different …

Unzipping DNA by a periodic force: Hysteresis loops, dynamical order parameter, correlations, and equilibrium curves

MS Kalyan, R Kapri - The Journal of chemical physics, 2019 - pubs.aip.org
The unzipping of a double stranded DNA whose ends are subjected to a time dependent
periodic force with frequency ω and amplitude G is studied using Monte Carlo simulations …

Hysteresis loop area scaling exponents in DNA unzipping by a periodic force: A Langevin dynamics simulation study

R Kapri - Physical Review E, 2021 - APS
Using Langevin dynamics simulations, we study the hysteresis in unzipping of longer double-
stranded DNA chains whose ends are subjected to a time-dependent periodic force with …

Study of unzipping transitions in an adsorbed polymer by a periodic force

RK Yadav - The European Physical Journal Plus, 2023 - Springer
Abstract Using Monte Carlo simulations, we study the dynamic transitions in the unzipping of
an adsorbed homogeneous polymer on a surface (or wall). We consider three different types …