Mitochondrial proteins: from biogenesis to functional networks

N Pfanner, B Warscheid, N Wiedemann - Nature reviews Molecular cell …, 2019 - nature.com
Mitochondria are essential for the viability of eukaryotic cells as they perform crucial
functions in bioenergetics, metabolism and signalling and have been associated with …

[HTML][HTML] Obesity shapes metabolism in the tumor microenvironment to suppress anti-tumor immunity

AE Ringel, JM Drijvers, GJ Baker, A Catozzi… - Cell, 2020 - cell.com
Obesity is a major cancer risk factor, but how differences in systemic metabolism change the
tumor microenvironment (TME) and impact anti-tumor immunity is not understood. Here, we …

TMTpro-18plex: the expanded and complete set of TMTpro reagents for sample multiplexing

J Li, Z Cai, RD Bomgarden, I Pike, K Kuhn… - Journal of proteome …, 2021 - ACS Publications
The development of the TMTpro-16plex series expanded the breadth of commercial isobaric
tagging reagents by nearly 50% over classic TMT-11plex. In addition to the described …

Excessive cell growth causes cytoplasm dilution and contributes to senescence

GE Neurohr, RL Terry, J Lengefeld, M Bonney… - cell, 2019 - cell.com
Cell size varies greatly between cell types, yet within a specific cell type and growth
condition, cell size is narrowly distributed. Why maintenance of a cell-type specific cell size …

Targeting immunosuppressive macrophages overcomes PARP inhibitor resistance in BRCA1-associated triple-negative breast cancer

AK Mehta, EM Cheney, CA Hartl, C Pantelidou… - Nature cancer, 2021 - nature.com
Despite objective responses to poly (ADP-ribose) polymerase (PARP) inhibition and
improvements in progression-free survival (PFS) compared to standard chemotherapy in …

TMT labeling for the masses: a robust and cost-efficient, in-solution labeling approach*[S]

J Zecha, S Satpathy, T Kanashova… - Molecular & cellular …, 2019 - ASBMB
Isobaric stable isotope labeling using, for example, tandem mass tags (TMTs) is increasingly
being applied for large-scale proteomic studies. Experiments focusing on proteoform …

Optimization of experimental parameters in data-independent mass spectrometry significantly increases depth and reproducibility of results

R Bruderer, OM Bernhardt, T Gandhi, Y Xuan… - Molecular & Cellular …, 2017 - ASBMB
Comprehensive, reproducible and precise analysis of large sample cohorts is one of the key
objectives of quantitative proteomics. Here, we present an implementation of data …

Definition of a high-confidence mitochondrial proteome at quantitative scale

M Morgenstern, SB Stiller, P Lübbert, CD Peikert… - Cell reports, 2017 - cell.com
Mitochondria perform central functions in cellular bioenergetics, metabolism, and signaling,
and their dysfunction has been linked to numerous diseases. The available studies cover …

Mechanism of adrenergic CaV1.2 stimulation revealed by proximity proteomics

G Liu, A Papa, AN Katchman, SI Zakharov, D Roybal… - Nature, 2020 - nature.com
Increased cardiac contractility during the fight-or-flight response is caused by β-adrenergic
augmentation of CaV1. 2 voltage-gated calcium channels,,–. However, this augmentation …

Emerging mass spectrometry-based proteomics methodologies for novel biomedical applications

LK Pino, J Rose, A O'Broin, S Shah… - Biochemical Society …, 2020 - portlandpress.com
Research into the basic biology of human health and disease, as well as translational
human research and clinical applications, all benefit from the growing accessibility and …