Cell–cell interactions orchestrate organismal development, homeostasis and single-cell
functions. When cells do not properly interact or improperly decode molecular messages …

Escherichia coli is considered to be the best-known microorganism given the large number
of published studies detailing its genes, its genome and the biochemical functions of its …

Interspecies interactions shape the structure and function of microbial communities. In
particular, positive, growth-promoting interactions can substantially affect the diversity and …

Microalgae have been developed as promising candidates for bioenergy production,
coupled with answering challenges related to water pollution and global warming. When …

Microalga–microbiome interactions are central to both health and disease of aquatic
environments. Despite impressive advances in deciphering how microorganisms participate …

The adverse impact of microplastics (MPs) on gut microbiota within aquatic animals
depends on the overall effect of chemicals and biofilm of MPs. Thus, it is ideal to fully …

Genome-scale metabolic models (GEMs) enable the mathematical simulation of the
metabolism of archaea, bacteria, and eukaryotic organisms. GEMs quantitatively define a …

Niche Theory is a central framework in ecology based on the recognition that most
interactions between organisms are indirect, mediated by the biotic and abiotic dynamical …

Microbe-derived dissolved organic nitrogen (mDON) can readily induce harmful
phytoplankton blooms, and thus, restricting its discharges is necessary. Recently, algae …

Highlights•Analysis and designing of microbiomes have become a new paradigm in
microbiology.•Understanding and rational engineering of microbiomes require model-based …