Coupling of mechanical deformation and electromagnetic fields in biological cells

M Torbati, K Mozaffari, L Liu, P Sharma - Reviews of Modern Physics, 2022 - APS
The cell, as the most fundamental unit of life, is a microcosm of biology in which the
confluence of nearly all aspects of classical physics (mechanics, statistical physics …

Principles and methods in computational membrane protein design

AA Vorobieva - Journal of Molecular Biology, 2021 - Elsevier
After decades of progress in computational protein design, the design of proteins folding and
functioning in lipid membranes appears today as the next frontier. Some notable successes …

Atomistic insight into lipid translocation by a TMEM16 scramblase

NP Bethel, M Grabe - … of the National Academy of Sciences, 2016 - National Acad Sciences
The transmembrane protein 16 (TMEM16) family of membrane proteins includes both lipid
scramblases and ion channels involved in olfaction, nociception, and blood coagulation …

Protein structure prediction and design in a biologically realistic implicit membrane

RF Alford, PJ Fleming, KG Fleming, JJ Gray - Biophysical Journal, 2020 - cell.com
Protein design is a powerful tool for elucidating mechanisms of function and engineering
new therapeutics and nanotechnologies. Although soluble protein design has advanced …

APBSmem: a graphical interface for electrostatic calculations at the membrane

KM Callenberg, OP Choudhary, GL de Forest… - PloS one, 2010 - journals.plos.org
Electrostatic forces are one of the primary determinants of molecular interactions. They help
guide the folding of proteins, increase the binding of one protein to another and facilitate …

Transfer of arginine into lipid bilayers is nonadditive

JL MacCallum, WFD Bennett, DP Tieleman - Biophysical journal, 2011 - cell.com
Computer simulations suggest that the translocation of arginine through the hydrocarbon
core of a lipid membrane proceeds by the formation of a water-filled defect that keeps the …

Molecular modeling of surfactant micellization using solvent-accessible surface area

H Chen, AZ Panagiotopoulos - Langmuir, 2019 - ACS Publications
We report a new implicit solvent simulation model for studying the self-assembly of
surfactants, where the hydrophobic interactions were captured by calculating the relative …

Quantitative modeling of membrane deformations by multihelical membrane proteins: application to G-protein coupled receptors

S Mondal, G Khelashvili, J Shan, OS Andersen… - Biophysical journal, 2011 - cell.com
The interpretation of experimental observations of the dependence of membrane protein
function on the properties of the lipid membrane environment calls for a consideration of the …

Membrane curvature sensing and symmetry breaking of the M2 proton channel from Influenza A

J Lincoff, CVM Helsell, FV Marcoline, AM Natale… - Elife, 2024 - elifesciences.org
The M2 proton channel aids in the exit of mature influenza viral particles from the host
plasma membrane through its ability to stabilize regions of high negative Gaussian …

[HTML][HTML] The role of membrane thickness in charged protein–lipid interactions

LB Li, I Vorobyov, TW Allen - Biochimica et Biophysica Acta (BBA) …, 2012 - Elsevier
Charged amino acids are known to be important in controlling the actions of integral and
peripheral membrane proteins and cell disrupting peptides. Atomistic molecular dynamics …