Transformation of animal genomics by next-generation sequencing technologies: a decade of challenges and their impact on genetic architecture

M Ghosh, N Sharma, AK Singh, M Gera… - Critical reviews in …, 2018 - Taylor & Francis
For more than a quarter of a century, sequencing technologies from Sanger's method to next-
generation high-throughput techniques have provided fascinating opportunities in the life …

Whole-genome sequencing of European autochthonous and commercial pig breeds allows the detection of signatures of selection for adaptation of genetic resources …

S Bovo, A Ribani, M Muñoz, E Alves, JP Araujo… - Genetics Selection …, 2020 - Springer
Background Natural and artificial directional selection in cosmopolitan and autochthonous
pig breeds and wild boars have shaped their genomes and resulted in a reservoir of animal …

Translocation of mitochondrial DNA into the nuclear genome blurs phylogeographic and conservation genetic studies in seabirds

T Lucas, B Vincent, P Eric - Royal Society Open Science, 2022 - royalsocietypublishing.org
Mitochondrial DNA (mtDNA) translocated into the nuclear genome (numt), when co-
analysed with genuine mtDNA, could plague phylogeographic studies. To evaluate numt …

Genomic and transcriptomic perspectives on the origin and evolution of NUMTs in Orthoptera

X Liu, N Liu, X Jing, H Khan, K Yang, Y Zheng… - Molecular Phylogenetics …, 2024 - Elsevier
Nuclear mitochondrial pseudogenes (NUMTs) result from the transfer of mitochondrial DNA
(mtDNA) to the nuclear genome. NUMTs, as “frozen” snapshots of mitochondria, can provide …

Tracking the distribution and burst of nuclear mitochondrial DNA sequences (NUMTs) in Fig Wasp Genomes

JX Wang, J Liu, YH Miao, DW Huang, JH Xiao - Insects, 2020 - mdpi.com
Simple Summary Nuclear mitochondrial DNA sequences (NUMTs), which result from the
insertion of exogenous mtDNA into the nuclear genome, are widely distributed in …

[HTML][HTML] Nuclear mitochondrial DNA sequences in the rabbit genome

B Biró, Z Gál, G Schiavo, A Ribari, VJ Utzeri… - Mitochondrion, 2022 - Elsevier
Numtogenesis is observable in the mammalian genomes resulting in the integration of
mitochondrial segments into the nuclear genomes (numts). To identify numts in rabbit, we …

Survey of mitochondrial sequences integrated into the bovine nuclear genome

ET Grau, M Charles, M Féménia, E Rebours… - Scientific Reports, 2020 - nature.com
Nuclear copies of the mitochondrial DNA (NUMTs) have already been described in several
species. In this context, we identified and analysed 166 bovine NUMT regions with a total …

A comprehensive atlas of nuclear sequences of mitochondrial origin (NUMT) inserted into the pig genome

M Bolner, S Bovo, M Ballan, G Schiavo… - Genetics Selection …, 2024 - Springer
Background The integration of nuclear mitochondrial DNA (mtDNA) into the mammalian
genomes is an ongoing, yet rare evolutionary process that produces nuclear sequences of …

Genomic landscape of mitochondrial DNA insertions in 23 bat genomes: characteristics, loci, phylogeny, and polymorphism

G Zhang, D Geng, Q Guo, W Liu, S Li, W Gao… - Integrative …, 2022 - Wiley Online Library
The transfer of mitochondrial DNA to the nuclear genome gives rise to the nuclear DNA
sequences of mitochondrial origin (NUMTs), considered as a driving force in genome …

Cytogenetic and genomic organization analyses of chloroplast DNA invasions in the nuclear genome of Asparagus officinalis L. provides signatures of evolutionary …

SF Li, JR Li, J Wang, R Dong, KL Jia, HW Zhu, N Li… - BMC plant biology, 2019 - Springer
Background The transfer of chloroplast DNA into nuclear genome is a common process in
plants. These transfers form nuclear integrants of plastid DNAs (NUPTs), which are thought …