Optical tweezers in single-molecule biophysics

CJ Bustamante, YR Chemla, S Liu… - Nature Reviews Methods …, 2021 - nature.com
Optical tweezers have become the method of choice in single-molecule manipulation
studies. In this Primer, we first review the physical principles of optical tweezers and the …

An overview of the molecular mechanisms of recombinational DNA repair

SC Kowalczykowski - Cold Spring Harbor Perspectives …, 2015 - cshperspectives.cshlp.org
Recombinational DNA repair is a universal aspect of DNA metabolism and is essential for
genomic integrity. It is a template-directed process that uses a second chromosomal copy …

Nanopore analytics: sensing of single molecules

S Howorka, Z Siwy - Chemical Society Reviews, 2009 - pubs.rsc.org
In nanopore analytics, individual molecules pass through a single nanopore giving rise to
detectable temporary blockades in ionic pore current. Reflecting its simplicity, nanopore …

Fluorescent labeling and modification of proteins

CP Toseland - Journal of chemical biology, 2013 - Springer
This review provides an outline for fluorescent labeling of proteins. Fluorescent assays are
very diverse providing the most sensitive and robust methods for observing biological …

Recent advances in optical tweezers

JR Moffitt, YR Chemla, SB Smith… - Annu. Rev …, 2008 - annualreviews.org
It has been over 20 years since the pioneering work of Arthur Ashkin, and in the intervening
years, the field of optical tweezers has grown tremendously. Optical tweezers are now being …

Ten years of tension: single-molecule DNA mechanics

C Bustamante, Z Bryant, SB Smith - Nature, 2003 - nature.com
The basic features of DNA were elucidated during the half-century following the discovery of
the double helix. But it is only during the past decade that researchers have been able to …

Probing liquid/solid interfaces at the molecular level

F Zaera - Chemical reviews, 2012 - ACS Publications
The ability to obtain a molecular-level understanding of the chemistry that takes place at
liquid/solid interfaces is key to the development and improvement of many chemical and …

RecBCD enzyme and the repair of double-stranded DNA breaks

MS Dillingham, SC Kowalczykowski - Microbiology and Molecular …, 2008 - Am Soc Microbiol
SUMMARY The RecBCD enzyme of Escherichia coli is a helicase-nuclease that initiates the
repair of double-stranded DNA breaks by homologous recombination. It also degrades …

The impact of DNA intercalators on DNA and DNA-processing enzymes elucidated through force-dependent binding kinetics

AS Biebricher, I Heller, RFH Roijmans… - Nature …, 2015 - nature.com
DNA intercalators are widely used as fluorescent probes to visualize DNA and DNA
transactions in vivo and in vitro. It is well known that they perturb DNA structure and stability …

Initiation and re-initiation of DNA unwinding by the Escherichia coli Rep helicase

T Ha, I Rasnik, W Cheng, HP Babcock, GH Gauss… - Nature, 2002 - nature.com
Helicases are motor proteins that couple conformational changes induced by ATP binding
and hydrolysis with unwinding of duplex nucleic acid,,, and are involved in several human …