Medium-chain alkane biodegradation and its link to some unifying attributes of alkB genes diversity
Hydrocarbon footprints in the environment, via biosynthesis, natural seepage,
anthropogenic activities and accidents, affect the ecosystem and induce a shift in the healthy …
anthropogenic activities and accidents, affect the ecosystem and induce a shift in the healthy …
The promiscuity of Phaseolus vulgaris L. (common bean) for nodulation with rhizobia: a review
A Shamseldin, E Velázquez - World Journal of Microbiology and …, 2020 - Springer
Phaseolus vulgaris L.(common bean) is a legume indigenous to American countries
currently cultivated in all continents, which is nodulated by different rhizobial species and …
currently cultivated in all continents, which is nodulated by different rhizobial species and …
Current methods for recombination detection in bacteria
The role of genetic exchanges, ie, homologous recombination (HR) and horizontal gene
transfer (HGT), in bacteria cannot be overestimated for it is a pivotal mechanism leading to …
transfer (HGT), in bacteria cannot be overestimated for it is a pivotal mechanism leading to …
HGTree v2. 0: a comprehensive database update for horizontal gene transfer (HGT) events detected by the tree-reconciliation method
Y Choi, S Ahn, M Park, SB Lee, S Cho… - Nucleic Acids …, 2023 - academic.oup.com
HGTree is a database that provides horizontal gene transfer (HGT) event information on
2472 prokaryote genomes using the tree-reconciliation method. HGTree was constructed in …
2472 prokaryote genomes using the tree-reconciliation method. HGTree was constructed in …
Phylogenomic Rhizobium Species Are Structured by a Continuum of Diversity and Genomic Clusters
The bacterial genus Rhizobium comprises diverse symbiotic nitrogen-fixing species
associated with the roots of plants in the Leguminosae family. Multiple genomic clusters …
associated with the roots of plants in the Leguminosae family. Multiple genomic clusters …
Genome-Based Metabolic Reconstruction of a Novel Uncultivated Freshwater Magnetotactic coccus “Ca. Magnetaquicoccus inordinatus” UR-1, and Proposal of a Candidate …
Magnetotactic bacteria are widely represented microorganisms that have the ability to
synthesize magnetosomes. The magnetotactic cocci of the order Magnetococcales are the …
synthesize magnetosomes. The magnetotactic cocci of the order Magnetococcales are the …
CRISPR-AMRtracker: A novel toolkit to monitor the antimicrobial resistance gene transfer in fecal microbiota
G Li, TF Long, SY Zhou, LJ Xia, A Gao, L Wan… - Drug Resistance …, 2024 - Elsevier
The spread of antibiotic resistance genes (ARGs), particularly those carried on plasmids,
poses a major risk to global health. However, the extent and frequency of ARGs transfer in …
poses a major risk to global health. However, the extent and frequency of ARGs transfer in …
Partner preference in the legume-rhizobia symbiosis and impact on legume inoculation strategies
Legumes interact with diverse soil bacteria of the genus Rhizobium to form dinitrogen (N 2)-
fixing symbiotic root nodules. This symbiotic interaction occurs under plant nitrogen (N) …
fixing symbiotic root nodules. This symbiotic interaction occurs under plant nitrogen (N) …
Reconstruction of time-consistent species trees
M Lafond, M Hellmuth - Algorithms for Molecular Biology, 2020 - Springer
Background The history of gene families—which are equivalent to event-labeled gene trees—
can to some extent be reconstructed from empirically estimated evolutionary event-relations …
can to some extent be reconstructed from empirically estimated evolutionary event-relations …
Genomic insight into the origins and evolution of symbiosis genes in Phaseolus vulgaris microsymbionts
Background Phaseolus vulgaris (common bean) microsymbionts belonging to the bacterial
genera Rhizobium, Bradyrhizobium, and Ensifer (Sinorhizobium) have been isolated across …
genera Rhizobium, Bradyrhizobium, and Ensifer (Sinorhizobium) have been isolated across …