Tutorial: guidance for quantitative confocal microscopy

J Jonkman, CM Brown, GD Wright, KI Anderson… - Nature protocols, 2020 - nature.com
When used appropriately, a confocal fluorescence microscope is an excellent tool for
making quantitative measurements in cells and tissues. The confocal microscope's ability to …

Phototoxicity in live fluorescence microscopy, and how to avoid it

J Icha, M Weber, JC Waters, C Norden - BioEssays, 2017 - Wiley Online Library
Phototoxicity frequently occurs during live fluorescence microscopy, and its consequences
are often underestimated. Damage to cellular macromolecules upon excitation light …

Best practices and tools for reporting reproducible fluorescence microscopy methods

P Montero Llopis, RA Senft, TJ Ross-Elliott… - Nature …, 2021 - nature.com
Although fluorescence microscopy is ubiquitous in biomedical research, microscopy
methods reporting is inconsistent and perhaps undervalued. We emphasize the importance …

Gradient light interference microscopy for 3D imaging of unlabeled specimens

TH Nguyen, ME Kandel, M Rubessa… - Nature …, 2017 - nature.com
Multiple scattering limits the contrast in optical imaging of thick specimens. Here, we present
gradient light interference microscopy (GLIM) to extract three-dimensional information from …

The cell biologist's guide to super-resolution microscopy

G Jacquemet, AF Carisey, H Hamidi… - Journal of Cell …, 2020 - journals.biologists.com
Fluorescence microscopy has become a ubiquitous method to observe the location of
specific molecular components within cells. However, the resolution of light microscopy is …

[HTML][HTML] Mechanosensing via cell-matrix adhesions in 3D microenvironments

AD Doyle, KM Yamada - Experimental cell research, 2016 - Elsevier
The extracellular matrix (ECM) microenvironment plays a central role in cell migration by
providing physiochemical information that influences overall cell behavior. Much of this …

3DeeCellTracker, a deep learning-based pipeline for segmenting and tracking cells in 3D time lapse images

C Wen, T Miura, V Voleti, K Yamaguchi, M Tsutsumi… - Elife, 2021 - elifesciences.org
Despite recent improvements in microscope technologies, segmenting and tracking cells in
three-dimensional time-lapse images (3D+ T images) to extract their dynamic positions and …

Ionizing radiation and complex DNA damage: from prediction to detection challenges and biological significance

IV Mavragani, Z Nikitaki, SA Kalospyros… - Cancers, 2019 - mdpi.com
Biological responses to ionizing radiation (IR) have been studied for many years, generally
showing the dependence of these responses on the quality of radiation, ie, the radiation …

A versatile and customizable low-cost 3D-printed open standard for microscopic imaging

B Diederich, R Lachmann, S Carlstedt… - Nature …, 2020 - nature.com
Modern microscopes used for biological imaging often present themselves as black boxes
whose precise operating principle remains unknown, and whose optical resolution and price …

[HTML][HTML] Any way you slice it—a comparison of confocal microscopy techniques

J Jonkman, CM Brown - Journal of biomolecular techniques: JBT, 2015 - ncbi.nlm.nih.gov
The confocal fluorescence microscope has become a popular tool for life sciences
researchers, primarily because of its ability to remove blur from outside of the focal plane of …