Protist metabarcoding and environmental biomonitoring: time for change

J Pawlowski, F Lejzerowicz… - European Journal of …, 2016 - Elsevier
High-throughput amplicon sequencing of environmental DNA and/or RNA proved to be a
powerful tool to describe protist diversity. This new approach called also the metabarcoding …

Benthic foraminiferal indices and environmental quality assessment of transitional waters: a review of current challenges and future research perspectives

PAJ O'Brien, I Polovodova Asteman, VMP Bouchet - Water, 2021 - mdpi.com
Transitional waters straddle the interface between marine and terrestrial biomes and, among
others, include fjords, bays, lagoons, and estuaries. These coastal systems are essential for …

The FOBIMO (FOraminiferal BIo-MOnitoring) initiative—Towards a standardised protocol for soft-bottom benthic foraminiferal monitoring studies

J Schönfeld, E Alve, E Geslin, F Jorissen… - Marine …, 2012 - Elsevier
The European Community Marine Strategy Framework Directive (MSFD) was established to
provide guidelines for monitoring the quality of marine ecosystems. Monitoring the status of …

Benthic foraminifera provide a promising tool for ecological quality assessment of marine waters

VMP Bouchet, E Alve, B Rygg, RJ Telford - Ecological indicators, 2012 - Elsevier
This study defines criteria for the use of benthic foraminifera (protists) as a quick and efficient
bio-monitoring tool to implement marine legislation. Various sampling and preparation …

Foram-AMBI: A sensitivity index based on benthic foraminiferal faunas from North-East Atlantic and Arctic fjords, continental shelves and slopes

E Alve, S Korsun, J Schönfeld, N Dijkstra… - Marine …, 2016 - Elsevier
The present study follows up the FOraminiferal BIo-MOnitoring (FOBIMO) working group's
aim to explore methods which will improve the usefulness of benthic foraminifera in …

Indicative value of benthic foraminifera for biomonitoring: Assignment to ecological groups of sensitivity to total organic carbon of species from European intertidal …

VMP Bouchet, F Frontalini, F Francescangeli… - Marine Pollution …, 2021 - Elsevier
This work contributes to the ongoing work aiming at confirming benthic foraminifera as a
biological quality element. In this study, benthic foraminifera from intertidal and transitional …

Assessing the ecological quality status of the highly polluted Bagnoli area (Tyrrhenian Sea, Italy) using foraminiferal eDNA metabarcoding

M Cavaliere, IB Angeles, M Montresor, C Bucci… - Science of the Total …, 2021 - Elsevier
Morphology-based benthic foraminifera indices are increasingly used worldwide for
biomonitoring the ecological quality of marine sediments. The recent development of …

Inferring the ecological quality status based on living benthic foraminiferal indices in transitional areas of the Guanabara bay (SE Brazil)

M Nunes, MVA Martins, F Frontalini, VMP Bouchet… - Environmental …, 2023 - Elsevier
Using benthic foraminifera, we evaluate the ecological quality status (EcoQS) of transitional
waters of the Guanabara Bay (SE Brazil) by applying the diversity-based index exp (H′ bc) …

Benthic foraminifera to assess Ecological Quality Statuses in Italian transitional waters

VMP Bouchet, E Goberville, F Frontalini - Ecological Indicators, 2018 - Elsevier
Estuaries, lagoons and lakes, identified as transitional waters (TWs), are fragile ecotones at
the interface between terrestrial and marine ecosystems. The assessment of their Ecological …

Defining past ecological status and in situ reference conditions using benthic foraminifera: a case study from the Oslofjord, Norway

JK Dolven, E Alve, B Rygg, J Magnusson - Ecological indicators, 2013 - Elsevier
Characterizing marine water bodies and defining ecological status, both present and past
(pre-impacted), has become an important task for EU's Member States and their associates …