Chloroplast genomes: diversity, evolution, and applications in genetic engineering

H Daniell, CS Lin, M Yu, WJ Chang - Genome biology, 2016 - Springer
Chloroplasts play a crucial role in sustaining life on earth. The availability of over 800
sequenced chloroplast genomes from a variety of land plants has enhanced our …

Green giant—a tiny chloroplast genome with mighty power to produce high‐value proteins: history and phylogeny

H Daniell, S Jin, XG Zhu… - Plant biotechnology …, 2021 - Wiley Online Library
Free‐living cyanobacteria were entrapped by eukaryotic cells~ 2 billion years ago, ultimately
giving rise to chloroplasts. After a century of debate, the presence of chloroplast DNA was …

Genomic history of the origin and domestication of common bean unveils its closest sister species

M Rendón-Anaya, JM Montero-Vargas… - Genome biology, 2017 - Springer
Background Modern civilization depends on only a few plant species for its nourishment.
These crops were derived via several thousands of years of human selection that …

GenomeVx: simple web-based creation of editable circular chromosome maps

GC Conant, KH Wolfe - Bioinformatics, 2008 - academic.oup.com
We describe GenomeVx, a web-based tool for making editable, publication-quality, maps of
mitochondrial and chloroplast genomes and of large plasmids. These maps show the …

Localized hypermutation and associated gene losses in legume chloroplast genomes

AM Magee, S Aspinall, DW Rice, BP Cusack… - Genome …, 2010 - genome.cshlp.org
Point mutations result from errors made during DNA replication or repair, so they are usually
expected to be homogeneous across all regions of a genome. However, we have found a …

The Chloroplast Genome Sequence of Mungbean (Vigna radiata) Determined by High-throughput Pyrosequencing: Structural Organization and Phylogenetic …

S Tangphatsornruang, D Sangsrakru… - DNA …, 2010 - academic.oup.com
Mungbean is an economically important crop which is grown principally for its protein-rich
dry seeds. However, genomic research of mungbean has lagged behind other species in …

Complete plastid genome sequence of the chickpea (Cicer arietinum) and the phylogenetic distribution of rps12 and clpP intron losses among legumes (Leguminosae …

RK Jansen, MF Wojciechowski, E Sanniyasi… - Molecular phylogenetics …, 2008 - Elsevier
Chickpea (Cicerarietinum, Leguminosae), an important grain legume, is widely used for food
and fodder throughout the world. We sequenced the complete plastid genome of chickpea …

Rpl33, a nonessential plastid-encoded ribosomal protein in tobacco, is required under cold stress conditions

M Rogalski, MA Schottler, W Thiele, WX Schulze… - The Plant …, 2008 - academic.oup.com
Plastid genomes contain a conserved set of genes encoding components of the translational
apparatus. While knockout of plastid translation is lethal in tobacco (Nicotiana tabacum), it is …

The chicken or the egg? Plastome evolution and an independent loss of the inverted repeat in papilionoid legumes

C Lee, IS Choi, D Cardoso, HC de Lima… - The Plant …, 2021 - Wiley Online Library
The plastid genome (plastome), while surprisingly constant in gene order and content
across most photosynthetic angiosperms, exhibits variability in several unrelated lineages …

Plastid genome sequences of legumes reveal parallel inversions and multiple losses of rps16 in papilionoids

EN Schwarz, TA Ruhlman, JSM Sabir… - … of Systematics and …, 2015 - Wiley Online Library
To date, publicly available plastid genomes of legumes have for the most part been limited
to the subfamily Papilionoideae. Here we report 13 new plastid genomes of legumes …