Chromatin structure influences rate and spectrum of spontaneous mutations in Neurospora crassa

MV de la Peña, PAM Summanen, M Liukkonen… - Genome …, 2023 - genome.cshlp.org
Although mutation rates have been extensively studied, variation in mutation rates
throughout the genome is poorly understood. To understand patterns of genetic variation, it …

Transposon Removal Reveals Their Adaptive Fitness Contribution

S Cranz-Mileva, E Reilly, N Chalhoub… - Genome biology and …, 2024 - academic.oup.com
Transposable elements are molecular parasites that persist in their host genome by
generating new copies to outpace natural selection. Transposable elements exert a large …

Permissiveness and competition within and between Neurospora crassa syncytia

AP Mela, NL Glass - Genetics, 2023 - academic.oup.com
A multinucleate syncytium is a common growth form in filamentous fungi. Comprehensive
functions of the syncytial state remain unknown, but it likely allows for a wide range of …

Quantitative genetics of temperature performance curves of Neurospora crassa

NN Moghadam, K Sidhu, PAM Summanen, T Ketola… - …, 2020 - academic.oup.com
Earth's temperature is increasing due to anthropogenic CO 2 emissions; and organisms
need either to adapt to higher temperatures, migrate into colder areas, or face extinction …

Parental effects in a filamentous fungus: Phenotype, fitness and mechanism

M Villalba de la Peña, PAM Summanen… - Molecular …, 2023 - Wiley Online Library
In nature, organisms have to cope with constantly changing environments. In certain
conditions, it may be advantageous for the parents to pass on information about the …

Interpreting and de-noising genetically engineered barcodes in a DNA virus

S Blois, BM Goetz, JJ Bull… - PLOS Computational …, 2022 - journals.plos.org
The concept of a nucleic acid barcode applied to pathogen genomes is easy to grasp and
the many possible uses are straightforward. But implementation may not be easy, especially …

[HTML][HTML] Metagenomic analysis of mycobiome in wild and captivity Sumatran orangutans (Pongo abelii)

S Safika, A Indrawati, U Afif, R Hidayat… - Journal of Advanced …, 2023 - ncbi.nlm.nih.gov
Objective: This study analyzes the mycobiome in wild and captive Sumatran orangutans.
Materials and Methods: Nine orangutan feces samples from the wild and nine from captivity …

Transposon extermination reveals their adaptive fitness contribution

S Cranz-Mileva, E Reilly, N Chalhoub, R Patel… - bioRxiv, 2021 - biorxiv.org
Transposable Elements are molecular parasites that persist in their host genome by
generating new copies to outpace natural selection. Here we measure the parameters …

Is Resistance Futile: Examining Fitness Costs Associated with QoI Resistance in E. necator

CL Newbold - 2021 - ir.library.oregonstate.edu
Quinone outside Inhibitor (QOI) fungicides are one of the most widely used fungicide classes
(FRAC 11) in the world. This popularity is the result of their ability to effectively manage a …

Silver-spoon effects increase competitive fitness in Neurospora crassa

P Summanen - 2020 - jyx.jyu.fi
Tools that help organisms to adjust to environmental changes are important for their survival,
as the possibility of change is constantly present in nature. Among these tools are between …