Introduction to thiopeptides: biological activity, biosynthesis, and strategies for functional reprogramming

AA Vinogradov, H Suga - Cell Chemical Biology, 2020 - cell.com
Thiopeptides (also known as thiazolyl peptides) are structurally complex natural products
with rich biological activities. Known for over 70 years for potent killing of Gram-positive …

De novo discovery of thiopeptide pseudo-natural products acting as potent and selective TNIK kinase inhibitors

AA Vinogradov, Y Zhang, K Hamada… - Journal of the …, 2022 - ACS Publications
Bioengineering of ribosomally synthesized and post-translationally modified peptides
(RiPPs) is an emerging approach to explore the diversity of pseudo-natural product …

Deep Learning-Driven Library Design for the De Novo Discovery of Bioactive Thiopeptides

JS Chang, AA Vinogradov, Y Zhang, Y Goto… - ACS Central …, 2023 - ACS Publications
Broad substrate tolerance of ribosomally synthesized and post-translationally modified
peptide (RiPP) biosynthetic enzymes has allowed numerous strategies for RiPP …

Natural thiopeptides as a privileged scaffold for drug discovery and therapeutic development

X Shen, M Mustafa, Y Chen, Y Cao, J Gao - Medicinal Chemistry …, 2019 - Springer
Since the start of the 21st century, antibiotic drug discovery and development from natural
products has experienced a certain renaissance. Currently, basic scientific research in …

Minimal lactazole scaffold for in vitro thiopeptide bioengineering

AA Vinogradov, M Shimomura, Y Goto, T Ozaki… - Nature …, 2020 - nature.com
Lactazole A is a cryptic thiopeptide from Streptomyces lactacystinaeus, encoded by a
compact 9.8 kb biosynthetic gene cluster. Here, we establish a platform for in vitro …

A Compact Reprogrammed Genetic Code for De Novo Discovery of Proteolytically Stable Thiopeptides

AA Vinogradov, Y Zhang, K Hamada… - Journal of the …, 2024 - ACS Publications
Thiopeptides make up a group of structurally complex peptidic natural products holding
promise in bioengineering applications. The previously established thiopeptide/mRNA …

The Catalytic Mechanism of the Class C Radical S‐Adenosylmethionine Methyltransferase NosN

W Ding, Y Li, J Zhao, X Ji, T Mo, H Qianzhu… - Angewandte …, 2017 - Wiley Online Library
S‐Adenosylmethionine (SAM) is one of the most common co‐substrates in enzyme‐
catalyzed methylation reactions. Most SAM‐dependent reactions proceed through an SN2 …

Reprogramming the biosynthesis of precursor peptide to create a selenazole-containing nosiheptide analogue

Y Tan, M Wang, Y Chen - ACS Synthetic Biology, 2022 - ACS Publications
Nosiheptide (NOS), a potent bactericidal thiopeptide, belongs to a class of natural products
produced by ribosomal synthesis and post-translational modifications, and its biosynthetic …

Biosynthesis of the nosiheptide indole side ring centers on a cryptic carrier protein NosJ

W Ding, W Ji, Y Wu, R Wu, WQ Liu, T Mo… - Nature …, 2017 - nature.com
Nosiheptide is a prototypal thiopeptide antibiotic, containing an indole side ring in addition
to its thiopeptide-characteristic macrocylic scaffold. This indole ring is derived from 3-methyl …

Nucleoside-linked shunt products in the reaction catalyzed by the class C radical S-adenosylmethionine methyltransferase NosN

W Ding, Y Wu, X Ji, H Qianzhu, F Chen… - Chemical …, 2017 - pubs.rsc.org
NosN is a class C radical S-adenosylmethionine (SAM) methyltransferase (RSMT) involved
in the biosynthesis of nosiheptide, a clinically interesting thiopeptide antibiotic produced by …