Single-cell transcriptome analysis highlights a role for neutrophils and inflammatory macrophages in the pathogenesis of severe COVID-19

H Shaath, R Vishnubalaji, E Elkord, NM Alajez - Cells, 2020 - mdpi.com
Cumulative data link cytokine storms with coronavirus disease 2019 (COVID-19) severity.
The precise identification of immune cell subsets in bronchoalveolar lavage (BAL) and their …

Protein coding and long noncoding RNA (lncRNA) transcriptional landscape in SARS-CoV-2 infected bronchial epithelial cells highlight a role for interferon and …

R Vishnubalaji, H Shaath, NM Alajez - Genes, 2020 - mdpi.com
The global spread of COVID-19, caused by pathogenic severe acute respiratory syndrome
coronavirus 2 (SARS-CoV-2) underscores the need for an imminent response from medical …

In situ mapping identifies distinct vascular niches for myelopoiesis

J Zhang, Q Wu, CB Johnson, G Pham, JM Kinder… - Nature, 2021 - nature.com
In contrast to nearly all other tissues, the anatomy of cell differentiation in the bone marrow
remains unknown. This is owing to a lack of strategies for examining myelopoiesis—the …

ANPELA: Significantly Enhanced Quantification Tool for Cytometry‐Based Single‐Cell Proteomics

Y Zhang, H Sun, X Lian, J Tang, F Zhu - Advanced science, 2023 - Wiley Online Library
ANPELA is widely used for quantifying traditional bulk proteomic data. Recently, there is a
clear shift from bulk proteomics to the single‐cell ones (SCP), for which powerful cytometry …

Mouse models of neutropenia reveal progenitor-stage-specific defects

DE Muench, A Olsson, K Ferchen, G Pham, RA Serafin… - Nature, 2020 - nature.com
Advances in genetics and sequencing have identified a plethora of disease-associated and
disease-causing genetic alterations. To determine causality between genetics and disease …

An immunophenotype-coupled transcriptomic atlas of human hematopoietic progenitors

X Zhang, B Song, MJ Carlino, G Li, K Ferchen… - Nature …, 2024 - nature.com
Abstract Analysis of the human hematopoietic progenitor compartment is being transformed
by single-cell multimodal approaches. Cellular indexing of transcriptomes and epitopes by …

Single-cell long noncoding RNA (lncRNA) transcriptome implicates MALAT1 in triple-negative breast cancer (TNBC) resistance to neoadjuvant chemotherapy

H Shaath, R Vishnubalaji, R Elango, S Khattak… - Cell Death …, 2021 - nature.com
Cumulative evidence suggests added benefit for neoadjuvant chemotherapy (NAC) in a
subset of triple-negative breast cancer (TNBC) patients. Herein we identified the long …

Single-cell analysis of neonatal HSC ontogeny reveals gradual and uncoordinated transcriptional reprogramming that begins before birth

Y Li, W Kong, W Yang, RM Patel, EB Casey… - Cell stem cell, 2020 - cell.com
Fetal and adult hematopoietic stem cells (HSCs) have distinct proliferation rates, lineage
biases, gene expression profiles, and gene dependencies. Although these differences are …

Cell fate dynamics and genomic programming of plasma cell precursors

GK Manakkat Vijay, H Singh - Immunological reviews, 2021 - Wiley Online Library
This review is focused on the cellular dynamics and genomic programming of plasma cell
(PC) precursors that arise during germinal center (GC) B cell responses in secondary …

Slow cycling and durable Flt3+ progenitors contribute to hematopoiesis under native conditions

M Solomon, B Song, V Govindarajah, S Good… - Journal of Experimental …, 2023 - rupress.org
The dynamics of the hematopoietic flux responsible for blood cell production in native
conditions remains a matter of debate. Using CITE-seq analyses, we uncovered a distinct …