Water dynamics in the hydration layer around proteins and micelles

B Bagchi - Chemical Reviews, 2005 - ACS Publications
This review deals with dynamics of water molecules in the hydration layer that surrounds
selfassemblies and proteins in aqueous solutions. This topic has not only seen a vigorous …

Protein hydration dynamics in solution: a critical survey

B Halle - Philosophical Transactions of the Royal Society …, 2004 - royalsocietypublishing.org
The properties of water in biological systems have been studied for well over a century by a
wide range of physical techniques, but progress has been slow and erratic. Protein …

Hydrogen-Bond Dynamics near a Micellar Surface: Origin of the Universal Slow Relaxation<? format?> at Complex Aqueous Interfaces

S Balasubramanian, S Pal, B Bagchi - Physical review letters, 2002 - APS
The dynamics of hydrogen bonds among water molecules themselves and with the polar
head groups (PHG) at a micellar surface have been investigated by long molecular …

Protein unfolding by SDS: the microscopic mechanisms and the properties of the SDS-protein assembly

D Winogradoff, S John, A Aksimentiev - Nanoscale, 2020 - pubs.rsc.org
The effects of detergent sodium dodecyl sulfate (SDS) on protein structure and dynamics are
fundamental to the most common laboratory technique used to separate proteins and …

Molecular aggregates in aqueous solutions of bile acid salts. Molecular dynamics simulation study

LB Pártay, P Jedlovszky, M Sega - The Journal of Physical …, 2007 - ACS Publications
The aggregation behavior of two bile acid salts (ie, sodium cholate and sodium
deoxycholate) has been studied in their aqueous solutions of three different concentrations …

Molecular view of water dynamics near model peptides

D Russo, RK Murarka, JRD Copley… - The Journal of …, 2005 - ACS Publications
Incoherent quasi-elastic neutron scattering (QENS) has been used to measure the dynamics
of water molecules in solutions of a model protein backbone, N-acetyl-glycine-methylamide …

Membrane protein dynamics versus environment: simulations of OmpA in a micelle and in a bilayer

PJ Bond, MSP Sansom - Journal of molecular biology, 2003 - Elsevier
The bacterial outer membrane protein OmpA is one of the few membrane proteins whose
structure has been solved both by X-ray crystallography and by NMR. Crystals were …

How proteins modify water dynamics

F Persson, P Söderhjelm, B Halle - The Journal of chemical physics, 2018 - pubs.aip.org
The dynamics of the protein-water interface is of fundamental importance for many biological
processes. Accordingly, a wide array of experimental techniques have been deployed in the …

An algorithm to describe molecular scale rugged surfaces and its application to the study of a water/lipid bilayer interface

SA Pandit, D Bostick, ML Berkowitz - The Journal of chemical physics, 2003 - pubs.aip.org
We propose an algorithm for the general description of rugged molecular scale interfacial
surfaces. This algorithm was implemented in the description of a phospholipid …

Dynamics of bound and free water in an aqueous micellar solution: Analysis of the lifetime and vibrational frequencies of hydrogen bonds at a complex interface

S Pal, S Balasubramanian, B Bagchi - Physical Review E, 2003 - APS
In order to understand the nature and dynamics of interfacial water molecules on the surface
of complex systems, large scale, fully atomistic molecular dynamics simulations of an …