DNA supercoiling and transcription in bacteria: a two-way street

CJ Dorman - BMC molecular and cell biology, 2019 - Springer
Background The processes of DNA supercoiling and transcription are interdependent
because the movement of a transcription elongation complex simultaneously induces under …

The regulation of DNA supercoiling across evolution

A Duprey, EA Groisman - Protein Science, 2021 - Wiley Online Library
DNA supercoiling controls a variety of cellular processes, including transcription,
recombination, chromosome replication, and segregation, across all domains of life. As a …

Large-scale reduction of the Bacillus subtilis genome: consequences for the transcriptional network, resource allocation, and metabolism

DR Reuß, J Altenbuchner, U Mäder, H Rath… - Genome …, 2017 - genome.cshlp.org
Understanding cellular life requires a comprehensive knowledge of the essential cellular
functions, the components involved, and their interactions. Minimized genomes are an …

Negative DNA supercoiling induces genome-wide Cas9 off-target activity

MD Newton, M Losito, QM Smith, N Parnandi, BJ Taylor… - Molecular Cell, 2023 - cell.com
CRISPR-Cas9 is a powerful gene-editing technology; however, off-target activity remains an
important consideration for therapeutic applications. We have previously shown that force …

High-resolution, genome-wide mapping of positive supercoiling in chromosomes

MS Guo, R Kawamura, ML Littlehale, JF Marko… - Elife, 2021 - elifesciences.org
Supercoiling impacts DNA replication, transcription, protein binding to DNA, and the three-
dimensional organization of chromosomes. However, there are currently no methods to …

The balance between gyrase and topoisomerase I activities determines levels of supercoiling, nucleoid compaction, and viability in bacteria

M García-López, D Megias, MJ Ferrándiz… - Frontiers in …, 2023 - frontiersin.org
Two enzymes are responsible for maintaining supercoiling in the human pathogen
Streptococcus pneumoniae, gyrase (GyrA2GyrB2) and topoisomerase I. To attain diverse …

DNA supercoiling: an ancestral regulator of gene expression in pathogenic bacteria?

S Martis, R Forquet, S Reverchon, W Nasser… - Computational and …, 2019 - Elsevier
DNA supercoiling acts as a global and ancestral regulator of bacterial gene expression. In
this review, we advocate that it plays a pivotal role in host-pathogen interactions by …

Chromosomal organization of transcription: in a nutshell

S Meyer, S Reverchon, W Nasser, G Muskhelishvili - Current genetics, 2018 - Springer
Early studies of transcriptional regulation focused on individual gene promoters defined
specific transcription factors as central agents of genetic control. However, recent genome …

Compaction and control—the role of chromosome-organizing proteins in Streptomyces

MJ Szafran, D Jakimowicz… - FEMS Microbiology …, 2020 - academic.oup.com
Chromosomes are dynamic entities, whose organization and structure depend on the
concerted activity of DNA-binding proteins and DNA-processing enzymes. In bacteria …

HU of Streptococcus pneumoniae Is Essential for the Preservation of DNA Supercoiling

MJ Ferrándiz, D Carreño, S Ayora… - Frontiers in …, 2018 - frontiersin.org
The histone-like protein HU is a conserved nucleoid-associated protein that is involved in
the maintenance of the bacterial chromosome architecture. It is the only known nucleoid …