Exploring the crop epigenome: a comparison of DNA methylation profiling techniques

DR Agius, A Kapazoglou, E Avramidou… - Frontiers in Plant …, 2023 - frontiersin.org
Epigenetic modifications play a vital role in the preservation of genome integrity and in the
regulation of gene expression. DNA methylation, one of the key mechanisms of epigenetic …

An ecologist's guide for studying DNA methylation variation in wild vertebrates

VN Laine, B Sepers, M Lindner… - Molecular Ecology …, 2023 - Wiley Online Library
The field of molecular biology is advancing fast with new powerful technologies, sequencing
methods and analysis software being developed constantly. Commonly used tools originally …

Early detection of hepatocellular carcinoma via no end-repair enzymatic methylation sequencing of cell-free DNA and pre-trained neural network

Z Deng, Y Ji, B Han, Z Tan, Y Ren, J Gao, N Chen… - Genome Medicine, 2023 - Springer
Background Early detection of hepatocellular carcinoma (HCC) is important in order to
improve patient prognosis and survival rate. Methylation sequencing combined with neural …

IMPRESS: Improved methylation profiling using restriction enzymes and smMIP sequencing, combined with a new biomarker panel, creating a multi-cancer detection …

J Vandenhoeck, I Neefs, T Vanpoucke… - British Journal of …, 2024 - nature.com
Background Despite the worldwide progress in cancer diagnostics, more sensitive
diagnostic biomarkers are needed. The methylome has been extensively investigated in the …

Novel urine cell-free DNA methylation markers for hepatocellular carcinoma

SY Lin, W Xia, AK Kim, D Chen, S Schleyer, L Choi… - Scientific reports, 2023 - nature.com
An optimized hepatocellular carcinoma (HCC)-targeted methylation next generation
sequencing assay was developed to discover HCC-associated methylation markers directly …

Evaluation of circulating tumor DNA by electropherogram analysis and methylome profiling in high-risk neuroblastomas

EM Trinidad, A Juan-Ribelles, G Pisano… - Frontiers in …, 2023 - frontiersin.org
Background Liquid biopsy has emerged as a promising, non-invasive diagnostic approach
in oncology because the analysis of circulating tumor DNA (ctDNA) reflects the precise …

An update on the cell-free DNA-derived methylome as a non-invasive biomarker for coronary artery disease

M Dash, B Mahajan, GM Dar, P Sahu… - The International Journal …, 2024 - Elsevier
Cardiovascular diseases are the foremost contributor to global mortality, presenting a
complex etiology and an expanding array of risk factors. Coronary artery disease …

Simultaneous detection of DNA variation and methylation at HLA class II locus and immune gene promoters using targeted SureSelect methyl-sequencing

M Kalomoiri, CR Prakash, S Lagström… - Frontiers in …, 2023 - frontiersin.org
The Human Leukocyte Antigen (HLA) locus associates with a variety of complex diseases,
particularly autoimmune and inflammatory conditions. The HLA-DR15 haplotype, for …

Whole genome methylation sequencing in blood identifies extensive differential DNA methylation in late‐onset dementia due to Alzheimer's disease

C Breen, LA Papale, LR Clark… - Alzheimer's & …, 2024 - Wiley Online Library
INTRODUCTION DNA microarray‐based studies report differentially methylated positions
(DMPs) in blood between late‐onset dementia due to Alzheimer's disease (AD) and …

Target-enriched enzymatic methyl sequencing: Flexible, scalable and inexpensive hybridization capture for quantifying DNA methylation

DR Rubenstein, J Solomon - Plos one, 2023 - journals.plos.org
The increasing interest in studying DNA methylation to understand how traits or diseases
develop requires new and flexible approaches for quantifying DNA methylation in a diversity …