Transposable elements and the epigenetic regulation of the genome

RK Slotkin, R Martienssen - Nature reviews genetics, 2007 - nature.com
Overlapping epigenetic mechanisms have evolved in eukaryotic cells to silence the
expression and mobility of transposable elements (TEs). Owing to their ability to recruit the …

New understanding of the relevant role of LINE-1 retrotransposition in human disease and immune modulation

X Zhang, R Zhang, J Yu - Frontiers in cell and developmental biology, 2020 - frontiersin.org
Long interspersed nuclear element-1 (LINE-1) retrotransposition is a major hallmark of
cancer accompanied by global chromosomal instability, genomic instability, and genetic …

Unsupervised learning with random forest predictors

T Shi, S Horvath - Journal of Computational and Graphical …, 2006 - Taylor & Francis
A random forest (RF) predictor is an ensemble of individual tree predictors. As part of their
construction, RF predictors naturally lead to a dissimilarity measure between the …

Why repetitive DNA is essential to genome function

JA Shapiro, R von Sternberg - Biological Reviews, 2005 - cambridge.org
There are clear theoretical reasons and many well-documented examples which show that
repetitive DNA is essential for genome function. Generic repeated signals in the DNA are …

Computational and experimental identification of novel human imprinted genes

PP Luedi, FS Dietrich, JR Weidman, JM Bosko… - Genome …, 2007 - genome.cshlp.org
Imprinted genes are essential in embryonic development, and imprinting dysregulation
contributes to human disease. We report two new human imprinted genes: KCNK9 is …

Epigenomics: beyond CpG islands

MJ Fazzari, JM Greally - Nature Reviews Genetics, 2004 - nature.com
Epigenomic studies aim to define the location and nature of the genomic sequences that are
epigenetically modified. Much progress has been made towards whole-genome epigenetic …

The ecology of the genome—mobile DNA elements and their hosts

JFY Brookfield - Nature Reviews Genetics, 2005 - nature.com
The genomes of multicellular eukaryotes provide information that determines the phenotype.
However, not all sequences in the genome are required for this purpose. Other sequences …

Genome-wide prediction of imprinted murine genes

PP Luedi, AJ Hartemink, RL Jirtle - Genome research, 2005 - genome.cshlp.org
Imprinted genes are epigenetically modified genes whose expression is determined
according to their parent of origin. They are involved in embryonic development, and …

Complete sequence assembly and characterization of the C57BL/6 mouse Ig heavy chain V region

CM Johnston, AL Wood, DJ Bolland… - The Journal of …, 2006 - journals.aai.org
The mechanisms that regulate variable (V) gene selection during the development of the
mouse IgH repertoire are not fully understood, due in part to the absence of the complete …

Developmental dynamics and disease potential of random monoallelic gene expression

AV Gendrel, M Attia, CJ Chen, P Diabangouaya… - Developmental cell, 2014 - cell.com
X chromosome inactivation (XCI) and allelic exclusion of olfactory receptors or
immunoglobulin loci represent classic examples of random monoallelic expression (RME) …