Molecular subtyping of cancer: current status and moving toward clinical applications

L Zhao, VHF Lee, MK Ng, H Yan… - Briefings in …, 2019 - academic.oup.com
Cancer is a collection of genetic diseases, with large phenotypic differences and genetic
heterogeneity between different types of cancers and even within the same cancer type …

Triclustering algorithms for three-dimensional data analysis: a comprehensive survey

R Henriques, SC Madeira - ACM Computing Surveys (CSUR), 2018 - dl.acm.org
Three-dimensional data are increasingly prevalent across biomedical and social domains.
Notable examples are gene-sample-time, individual-feature-time, or node-node-time data …

Tensor clustering with planted structures: Statistical optimality and computational limits

Y Luo, AR Zhang - The Annals of Statistics, 2022 - projecteuclid.org
Tensor clustering with planted structures: Statistical optimality and computational limits
Page 1 The Annals of Statistics 2022, Vol. 50, No. 1, 584–613 https://doi.org/10.1214/21-AOS2123 …

Biclustering data analysis: a comprehensive survey

EN Castanho, H Aidos, SC Madeira - Briefings in Bioinformatics, 2024 - academic.oup.com
Biclustering, the simultaneous clustering of rows and columns of a data matrix, has proved
its effectiveness in bioinformatics due to its capacity to produce local instead of global …

BSig: evaluating the statistical significance of biclustering solutions

R Henriques, SC Madeira - Data Mining and Knowledge Discovery, 2018 - Springer
Statistical evaluation of biclustering solutions is essential to guarantee the absence of
spurious relations and to validate the high number of scientific statements inferred from …

Computational lower bounds for graphon estimation via low-degree polynomials

Y Luo, C Gao - The Annals of Statistics, 2024 - projecteuclid.org
Computational lower bounds for graphon estimation via low-degree polynomials Page 1 The
Annals of Statistics 2024, Vol. 52, No. 5, 2318–2348 https://doi.org/10.1214/24-AOS2437 © …

[HTML][HTML] Comprehensive assessment of triclustering algorithms for three-way temporal data analysis

DF Soares, R Henriques, SC Madeira - Pattern Recognition, 2024 - Elsevier
The analysis of temporal data has gained increasing attention in recent years, aiming to
identify patterns and trends that change over time. Temporal triclustering is a promising …

Biclustering multivariate discrete longitudinal data

M Alfó, MF Marino, F Martella - Statistics and Computing, 2024 - Springer
A model-based biclustering method for multivariate discrete longitudinal data is proposed.
We consider a finite mixture of generalized linear models to cluster units and, within each …

A hierarchical Bayesian model for flexible module discovery in three-way time-series data

D Amar, D Yekutieli, A Maron-Katz, T Hendler… - …, 2015 - academic.oup.com
Motivation: Detecting modules of co-ordinated activity is fundamental in the analysis of large
biological studies. For two-dimensional data (eg genes× patients), this is often done via …

[HTML][HTML] TriSig: Evaluating the statistical significance of triclusters

L Alexandre, RS Costa, R Henriques - Pattern Recognition, 2024 - Elsevier
Tensor data analysis allows researchers to uncover novel patterns and relationships that
cannot be obtained from tabular data alone. The information inferred from multi-way patterns …