Performance and application of 16S rRNA gene cycle sequencing for routine identification of bacteria in the clinical microbiology laboratory

DL Church, L Cerutti, A Gürtler, T Griener… - Clinical microbiology …, 2020 - Am Soc Microbiol
This review provides a state-of-the-art description of the performance of Sanger cycle
sequencing of the 16S rRNA gene for routine identification of bacteria in the clinical …

The various roles of fatty acids

CCCR De Carvalho, MJ Caramujo - Molecules, 2018 - mdpi.com
Lipids comprise a large group of chemically heterogeneous compounds. The majority have
fatty acids (FA) as part of their structure, making these compounds suitable tools to examine …

[HTML][HTML] Application of next generation sequencing in laboratory medicine

Y Zhong, F Xu, J Wu, J Schubert… - Annals of laboratory …, 2021 - synapse.koreamed.org
The rapid development of next-generation sequencing (NGS) technology, including
advances in sequencing chemistry, sequencing technologies, bioinformatics, and data …

The rebirth of culture in microbiology through the example of culturomics to study human gut microbiota

JC Lagier, P Hugon, S Khelaifia… - Clinical microbiology …, 2015 - Am Soc Microbiol
Bacterial culture was the first method used to describe the human microbiota, but this
method is considered outdated by many researchers. Metagenomics studies have since …

16S rRNA gene sequencing for bacterial identification in the diagnostic laboratory: pluses, perils, and pitfalls

JM Janda, SL Abbott - Journal of clinical microbiology, 2007 - Am Soc Microbiol
The use of 16S rRNA gene sequences to study bacterial phylogeny and taxonomy has been
by far the most common housekeeping genetic marker used for a number of reasons. These …

Impact of 16S rRNA gene sequence analysis for identification of bacteria on clinical microbiology and infectious diseases

JE Clarridge III - Clinical microbiology reviews, 2004 - Am Soc Microbiol
The traditional identification of bacteria on the basis of phenotypic characteristics is
generally not as accurate as identification based on genotypic methods. Comparison of the …

[HTML][HTML] Then and now: use of 16S rDNA gene sequencing for bacterial identification and discovery of novel bacteria in clinical microbiology laboratories

PCY Woo, SKP Lau, JLL Teng, H Tse… - Clinical Microbiology and …, 2008 - Elsevier
In the last decade, as a result of the widespread use of PCR and DNA sequencing, 16S
rDNA sequencing has played a pivotal role in the accurate identification of bacterial isolates …

16S ribosomal DNA sequence analysis of a large collection of environmental and clinical unidentifiable bacterial isolates

M Drancourt, C Bollet, A Carlioz… - Journal of clinical …, 2000 - Am Soc Microbiol
Some bacteria are difficult to identify with phenotypic identification schemes commonly used
outside reference laboratories. 16S ribosomal DNA (rDNA)-based identification of bacteria …

Isolation and characterization of endophytic colonizing bacteria from agronomic crops and prairie plants

DK Zinniel, P Lambrecht, NB Harris… - Applied and …, 2002 - Am Soc Microbiol
Endophytic bacteria reside within plant hosts without causing disease symptoms. In this
study, 853 endophytic strains were isolated from aerial tissues of four agronomic crop …

Evaluation of Protein A Gene Polymorphic Region DNA Sequencing for Typing of Staphylococcus aureus Strains

B Shopsin, M Gomez, SO Montgomery… - Journal of clinical …, 1999 - Am Soc Microbiol
Three hundred and twenty isolates of Staphylococcus aureus were typed by DNA sequence
analysis of the X region of the protein A gene (spa). spa typing was compared to both …