[HTML][HTML] Unveiling network-based functional features through integration of gene expression into protein networks

M Jalili, T Gebhardt, O Wolkenhauer… - … et Biophysica Acta (BBA …, 2018 - Elsevier
Decoding health and disease phenotypes is one of the fundamental objectives in
biomedicine. Whereas high-throughput omics approaches are available, it is evident that …

[HTML][HTML] aiGeneR 1.0: An Artificial Intelligence Technique for the Revelation of Informative and Antibiotic Resistant Genes in Escherichia coli

DSK Nayak, S Mahapatra, SP Routray… - Frontiers in Bioscience …, 2024 - imrpress.com
Background: There are several antibiotic resistance genes (ARG) for the Escherichia coli (E.
coli) bacteria that cause urinary tract infections (UTI), and it is therefore important to identify …

Integrative biomarker detection on high-dimensional gene expression data sets: a survey on prior knowledge approaches

C Perscheid - Briefings in bioinformatics, 2021 - academic.oup.com
Gene expression data provide the expression levels of tens of thousands of genes from
several hundred samples. These data are analyzed to detect biomarkers that can be of …

Identifying dense subgraphs in protein–protein interaction network for gene selection from microarray data

T Swarnkar, SN Simoes, A Anura, H Brentani… - … Modeling Analysis in …, 2015 - Springer
Selection of important genes responsible for a disease is an important task in bioinformatics.
Microarray data are often used with differential expression being considered as a cue …

Graph-based unsupervised feature selection and multiview clustering for microarray data

T Swarnkar, P Mitra - Journal of biosciences, 2015 - Springer
A challenge in bioinformatics is to analyse volumes of gene expression data generated
through microarray experiments and obtain useful information. Consequently, most …

Investigating multiview and multitask learning frameworks for predicting drug-disease associations

SN Chandrasekaran, A Koutsoukas… - Proceedings of the 7th …, 2016 - dl.acm.org
Drugs exhibit their therapeutic effects by interacting and modulating one or multiple protein
targets simultaneously; hence deeper insights of complex drug-disease-targets associations …

Integrative biomarker detection using prior knowledge on gene expression data sets

C Perscheid - 2023 - publishup.uni-potsdam.de
Gene expression data is analyzed to identify biomarkers, eg relevant genes, which serve for
diagnostic, predictive, or prognostic use. Traditional approaches for biomarker detection …

Uma abordagem de integração de dados de redes PPI e expressão gênica para priorizar genes relacionados a doenças complexas

SN Simões - 2015 - teses.usp.br
Doenças complexas são caracterizadas por serem poligênicas e multifatoriais, o que
representa um desafio em relação à busca de genes relacionados a elas. Com o advento …

[PDF][PDF] Comparative Study of Computational Tools for Hub Gene Selection from Genetic Network using Microarray Data

B Mandal, S Mahapatra, T Swarnkar - POLIBITS, 2017 - polibits.cidetec.ipn.mx
Selection of genes associated to complex diseases has been a challenging task in the field
of bioinformatics. Through various studies it has been concluded that selection of highly …

[引用][C] BBA-Molecular Basis of Disease