The emerging role of the peptidome in biomarker discovery and degradome profiling

ZW Lai, A Petrera, O Schilling - Biological chemistry, 2015 - degruyter.com
The peptidome represents the array of endogenous peptides that are present in both the
intracellular and extracellular space of the body. Peptides are constantly generated in vivo …

Histone H3 lysine 27 acetylation is altered in colon cancer

J Karczmarski, T Rubel, A Paziewska, M Mikula… - Clinical proteomics, 2014 - Springer
Background Histone post-translational modifications (PTMs) play an important role in the
regulation of the expression of genes, including those involved in cancer development and …

N-glycosylation acts as a switch for FGFR1 trafficking between the plasma membrane and nuclear envelope

P Gregorczyk, N Porębska, D Żukowska… - Cell Communication and …, 2023 - Springer
Fibroblast growth factor receptor 1 (FGFR1) is a heavily N-glycosylated cell surface receptor
tyrosine kinase that transmits signals across the plasma membrane, in response to fibroblast …

Proteome Profiling of the Dystrophic mdx Mice Diaphragm

O Mucha, M Myszka, P Podkalicka, B Świderska… - Biomolecules, 2023 - mdpi.com
Mdx mice with a spontaneous mutation in exon 23 of the Dmd gene represent the most
common model to investigate the pathophysiology of Duchenne muscular dystrophy (DMD) …

Stress-induced Changes in the S-palmitoylation and S-nitrosylation of Synaptic Proteins*[S]

M Zareba-Koziol, A Bartkowiak-Kaczmarek… - Molecular & Cellular …, 2019 - ASBMB
The precise regulation of synaptic integrity is critical for neuronal network connectivity and
proper brain function. Essential aspects of the activity and localization of synaptic proteins …

Functional protease profiling for diagnosis of malignant disease

P Findeisen, M Neumaier - Proteomics–Clinical Applications, 2012 - Wiley Online Library
Clinical proteomic profiling by mass spectrometry (MS) aims at uncovering specific
alterations within mass profiles of clinical specimens that are of diagnostic value for the …

Diffprot—software for non-parametric statistical analysis of differential proteomics data

A Malinowska, M Kistowski, M Bakun, T Rubel… - Journal of …, 2012 - Elsevier
Mass spectrometry-based global proteomics experiments generate large sets of data that
can be converted into useful information only with an appropriate statistical approach. We …

ApoE4 disrupts interaction of sortilin with fatty acid-binding protein 7 essential to promote lipid signaling

A Asaro, R Sinha, M Bakun, O Kalnytska… - Journal of cell …, 2021 - journals.biologists.com
Sortilin is a neuronal receptor for apolipoprotein E (apoE). Sortilin-dependent uptake of
lipidated apoE promotes conversion of polyunsaturated fatty acids (PUFA) into …

Composition and function of the C1b/C1f region in the ciliary central apparatus

E Joachimiak, A Osinka, H Farahat, B Świderska… - Scientific reports, 2021 - nature.com
Motile cilia are ultrastructurally complex cell organelles with the ability to actively move. The
highly conserved central apparatus of motile 9× 2+ 2 cilia is composed of two microtubules …

Proteomic profile of saliva in Parkinson's disease patients: A proof of concept study

M Figura, E Sitkiewicz, B Świderska, Ł Milanowski… - Brain Sciences, 2021 - mdpi.com
Parkinson's disease (PD) is a progressive neurodegenerative disorder. It affects many
organs. Lewy bodies—a histopathological “hallmark” of PD—are detected in about 75% of …