[HTML][HTML] Advances in optical mapping for genomic research
Recent advances in optical mapping have allowed the construction of improved genome
assemblies with greater contiguity. Optical mapping also enables genome comparison and …
assemblies with greater contiguity. Optical mapping also enables genome comparison and …
The state of squamate genomics: past, present, and future of genome research in the most speciose terrestrial vertebrate order
SM Gable, JM Mendez, NA Bushroe, A Wilson… - Genes, 2023 - mdpi.com
Squamates include more than 11,000 extant species of lizards, snakes, and
amphisbaenians, and display a dazzling diversity of phenotypes across their over 200 …
amphisbaenians, and display a dazzling diversity of phenotypes across their over 200 …
Large-scale snake genome analyses provide insights into vertebrate development
Snakes are a remarkable squamate lineage with unique morphological adaptations,
especially those related to the evolution of vertebrate skeletons, organs, and sensory …
especially those related to the evolution of vertebrate skeletons, organs, and sensory …
The evolutionary network of whiptail lizards reveals predictable outcomes of hybridization
AJ Barley, A Nieto-Montes de Oca… - Science, 2022 - science.org
Hybridization between diverging lineages is associated with the generation and loss of
species diversity, introgression, adaptation, and changes in reproductive mode, but it is …
species diversity, introgression, adaptation, and changes in reproductive mode, but it is …
Convergent and lineage-specific genomic differences in limb regulatory elements in limbless reptile lineages
Loss of limbs evolved many times in squamate reptiles. Here we investigated the genomic
basis of convergent limb loss in reptiles. We sequenced the genomes of a closely related …
basis of convergent limb loss in reptiles. We sequenced the genomes of a closely related …
Chromosome-scale genome assembly of the brown anole (Anolis sagrei), an emerging model species
Rapid technological improvements are democratizing access to high quality, chromosome-
scale genome assemblies. No longer the domain of only the most highly studied model …
scale genome assemblies. No longer the domain of only the most highly studied model …
A chromosome-level genome assembly of an alpine plant Crucihimalaya lasiocarpa provides insights into high-altitude adaptation
It remains largely unknown how plants adapt to high-altitude habitats. Crucihimalaya
(Brassicaceae) is an alpine genus occurring in the Qinghai–Tibet Plateau characterized by …
(Brassicaceae) is an alpine genus occurring in the Qinghai–Tibet Plateau characterized by …
De Novo Genome Assembly of Populus simonii Further Supports That Populus simonii and Populus trichocarpa Belong to Different Sections
H Wu, D Yao, Y Chen, W Yang, W Zhao… - G3: Genes …, 2020 - academic.oup.com
Populus simonii is an important tree in the genus Populus, widely distributed in the Northern
Hemisphere and having a long cultivation history. Although this species has ecologically …
Hemisphere and having a long cultivation history. Although this species has ecologically …
Optimizing phylogenomics with rapidly evolving long exons: comparison with anchored hybrid enrichment and ultraconserved elements
Marker selection has emerged as an important component of phylogenomic study design
due to rising concerns of the effects of gene tree estimation error, model misspecification …
due to rising concerns of the effects of gene tree estimation error, model misspecification …
RepeatFiller newly identifies megabases of aligning repetitive sequences and improves annotations of conserved non-exonic elements
Background Transposons and other repetitive sequences make up a large part of complex
genomes. Repetitive sequences can be co-opted into a variety of functions and thus provide …
genomes. Repetitive sequences can be co-opted into a variety of functions and thus provide …