Cross-linking mass spectrometry for investigating protein conformations and protein–protein interactions─ a method for all seasons

L Piersimoni, PL Kastritis, C Arlt, A Sinz - Chemical Reviews, 2021 - ACS Publications
Mass spectrometry (MS) has become one of the key technologies of structural biology. In this
review, the contributions of chemical cross-linking combined with mass spectrometry (XL …

[HTML][HTML] Phytochemicals in drug discovery—A confluence of tradition and innovation

P Chihomvu, A Ganesan, S Gibbons… - International Journal of …, 2024 - mdpi.com
Phytochemicals have a long and successful history in drug discovery. With recent
advancements in analytical techniques and methodologies, discovering bioactive leads from …

Prosight native: defining protein complex composition from native top-down mass spectrometry data

KR Durbin, MT Robey, LN Voong… - Journal of Proteome …, 2023 - ACS Publications
Native mass spectrometry has recently moved alongside traditional structural biology
techniques in its ability to provide clear insights into the composition of protein complexes …

The snoRNA-like lncRNA LNC-SNO49AB drives leukemia by activating the RNA-editing enzyme ADAR1

W Huang, YM Sun, Q Pan, K Fang, XT Chen, ZC Zeng… - Cell discovery, 2022 - nature.com
Long noncoding RNAs (lncRNAs) are usually 5′ capped and 3′ polyadenylated, similar to
most typical mRNAs. However, recent studies revealed a type of snoRNA-related lncRNA …

Greater than the sum of parts: mechanisms of metabolic regulation by enzyme filaments

KL Hvorecny, JM Kollman - Current opinion in structural biology, 2023 - Elsevier
Recent work in structural biology is shedding light on how many of the enzymes of
intermediary metabolism are self-and co-assembling into large, filamentous polymers or …

From integrative structural biology to cell biology

A Sali - Journal of Biological Chemistry, 2021 - ASBMB
Integrative modeling is an increasingly important tool in structural biology, providing
structures by combining data from varied experimental methods and prior information. As a …

Computational elucidation of allosteric communication in proteins for allosteric drug design

D Ni, Y Liu, R Kong, Z Yu, S Lu, J Zhang - Drug Discovery Today, 2022 - Elsevier
Highlights•Allosteric signals underlie the functional mechanisms of allosteric
drugs.•Elucidation of allosteric signals facilitates rational allosteric drug discovery.• …

Dynamic interactomics by cross-linking mass spectrometry: mapping the daily cell life in postgenomic era

L Santorelli, M Caterino, M Costanzo - OMICS: A Journal of …, 2022 - liebertpub.com
The majority of processes that occur in daily cell life are modulated by hundreds to
thousands of dynamic protein–protein interactions (PPI). The resulting protein complexes …

EPR spectroscopy provides new insights into complex biological reaction mechanisms

L Hofmann, S Ruthstein - The Journal of Physical Chemistry B, 2022 - ACS Publications
In the last 20 years, the use of electron paramagnetic resonance (EPR) has made a
pronounced and lasting impact in the field of structural biology. The advantage of EPR …

Increasing the Modulation Depth of GdIII-Based Pulsed Dipolar EPR Spectroscopy (PDS) with Porphyrin–GdIII Laser-Induced Magnetic Dipole Spectroscopy

A Scherer, X Yao, M Qi, M Wiedmaier… - The Journal of …, 2022 - ACS Publications
Distance determination with pulsed EPR has become an important technique for the
structural investigation of biomacromolecules, with double electron–electron resonance …