A primer on metagenomics and next‐generation sequencing in fish gut microbiome research

TK Johny, RM Puthusseri, SG Bhat - Aquaculture Research, 2021 - Wiley Online Library
The fish gut is a complex ecosystem populated by an exceedingly diverse and assorted
group of microbes, influenced by various factors such as habitat salinity, temperature, trophic …

Systematic literature review identifying bacterial constituents in the core intestinal microbiome of rainbow trout (Oncorhynchus mykiss)

IS Hines, MA Marshall, SA Smith… - … , Fish and Fisheries, 2023 - Wiley Online Library
Fish aquaculture has become the fastest growing sector in global food production. Thus,
ensuring the sustainability of aquaculture practices is of the utmost importance. Studies in …

Quantifying the colonization of environmental microbes in the fish gut: a case study of wild fish populations in the Yangtze River

H Yang, J Wu, H Du, H Zhang, J Li, Q Wei - Frontiers in Microbiology, 2022 - frontiersin.org
In aquatic animals, gut microbial communities shift with host development and living
environments. Understanding the mechanism by which the environment impacts the gut …

Impact of Putative Probiotics on Growth, Behavior, and the Gut Microbiome of Farmed Arctic Char (Salvelinus alpinus)

S Knobloch, S Skírnisdóttir, M Dubois… - Frontiers in …, 2022 - frontiersin.org
Beneficial bacteria promise to promote the health and productivity of farmed fish species.
However, the impact on host physiology is largely strain-dependent, and studies on Arctic …

The microbiome of Chinook salmon (Oncorhynchus tshawytscha) in a recirculation aquaculture system

K Steiner, K Heasman, O Laroche, X Pochon, M Preece… - Aquaculture, 2021 - Elsevier
The intestinal microbiome has recently been described for a variety of fish species and has
been shown to influence host biology, including physiology, health and behavior …

Longitudinal sampling of external mucosae in farmed European seabass reveals the impact of water temperature on bacterial dynamics

D Rosado, R Xavier, J Cable, R Severino… - ISME …, 2021 - academic.oup.com
Fish microbiota are intrinsically linked to health and fitness, but they are highly variable and
influenced by both biotic and abiotic factors. Water temperature particularly limits bacterial …

The gut microbiome of farmed Arctic char (Salvelinus alpinus) is shaped by feeding stage and nutrient presence

S Knobloch, S Skirnisdóttir, M Dubois, L Mayolle… - FEMS …, 2024 - academic.oup.com
The gut microbiome plays an important role in maintaining health and productivity of farmed
fish. However, the functional role of most gut microorganisms remains unknown. Identifying …

Environmental impacts on skin microbiomes of sympatric high Arctic salmonids

EF Hamilton, CL Juurakko, K Engel, JD Neufeld… - Fishes, 2023 - mdpi.com
In the region of King William Island, Nunavut, in the Canadian high Arctic, populations of
salmonids including Arctic char (Salvelinus alpinus), cisco (Coregonus autumnalis and C …

Microbiome, epigenetics and fish health interactions in aquaculture

S Consuegra, TU Webster, I Anka - Epigenetics in Aquaculture, 2023 - Wiley Online Library
The growing importance of aquaculture for food security, and the increasing awareness of
the need for sustainable alternatives to traditional feeds and antimicrobials, have driven an …

Key Performance Indicators of Common Carp (Cyprinus carpio L.) Wintering in a Pond and RAS under Different Feeding Schemes

P Eljasik, R Panicz, M Sobczak, J Sadowski - Sustainability, 2022 - mdpi.com
Overwintering impacts common carp performance, yet the nature of changes is not known.
The aim of the study was to compare the zootechnical and key performance indicators (KPI) …