[HTML][HTML] Comprehensive assessment of triclustering algorithms for three-way temporal data analysis

DF Soares, R Henriques, SC Madeira - Pattern Recognition, 2024 - Elsevier
The analysis of temporal data has gained increasing attention in recent years, aiming to
identify patterns and trends that change over time. Temporal triclustering is a promising …

Triclustering-based classification of longitudinal data for prognostic prediction: targeting relevant clinical endpoints in amyotrophic lateral sclerosis

DF Soares, R Henriques, M Gromicho… - Scientific Reports, 2023 - nature.com
This work proposes a new class of explainable prognostic models for longitudinal data
classification using triclusters. A new temporally constrained triclustering algorithm, termed …

G-Tric: generating three-way synthetic datasets with triclustering solutions

J Lobo, R Henriques, SC Madeira - BMC bioinformatics, 2021 - Springer
Background Three-way data started to gain popularity due to their increasing capacity to
describe inherently multivariate and temporal events, such as biological responses, social …

A novel density based community detection algorithm and its application in detecting potential biomarkers of ESCC

B Baruah, MP Dutta, S Banerjee… - Journal of Computational …, 2024 - Elsevier
The development of statistically and biologically competent Community Detection Algorithm
(CDA) is essential for extracting hidden information from massive biological datasets. This …

Identifying condition specific key genes from basal-like breast cancer gene expression data

A Maind, S Raut - Computational biology and chemistry, 2019 - Elsevier
Mining patterns of co-expressed genes across the subset of conditions help to narrow down
the search space for the analysis of gene expression data. Identifying conditions specific key …

[图书][B] Gene expression data analysis: a statistical and machine learning perspective

P Barah, DK Bhattacharyya, JK Kalita - 2021 - taylorfrancis.com
Development of high-throughput technologies in molecular biology during the last two
decades has contributed to the production of tremendous amounts of data. Microarray and …

[PDF][PDF] Triclustering method for finding biomarkers in human immunodeficiency virus-1 gene expression data

T Siswantining, A Bustamam, D Sarwinda… - Mathematical …, 2022 - aimspress.com
HIV-1 is a virus that destroys CD4+ cells in the body's immune system, causing a drastic
decline in immune system performance. Analysis of HIV-1 gene expression data is urgently …

EnsemBic: An effective ensemble of biclustering to identify potential biomarkers of esophageal squamous cell carcinoma

B Baruah, MP Dutta, S Banerjee… - … Biology and Chemistry, 2024 - Elsevier
The development of functionally enriched and biologically competent biclustering algorithm
is essential for extracting hidden information from massive biological datasets. This paper …

Identification of ESCC potential biomarkers using biclustering algorithms

B Baruah, MP Dutta, DK Bhattacharyya - Gene Reports, 2022 - Elsevier
An extensive empirical study is presented in this work to identify potential biomarkers of
ESCC by employing fifteen prominent biclustering algorithms on synthetic and real datasets …

An effective ensemble method for missing data imputation

B Baruah, MP Dutta… - International Journal of …, 2023 - inderscienceonline.com
The presence of missing data in a dataset plays a vital role in the design of classification,
clustering, or regression methods. An efficient missing data imputation can enhance the …