Protein design: From the aspect of water solubility and stability

R Qing, S Hao, E Smorodina, D Jin, A Zalevsky… - Chemical …, 2022 - ACS Publications
Water solubility and structural stability are key merits for proteins defined by the primary
sequence and 3D-conformation. Their manipulation represents important aspects of the …

De novo protein design, a retrospective

IV Korendovych, WF DeGrado - Quarterly reviews of biophysics, 2020 - cambridge.org
Proteins are molecular machines whose function depends on their ability to achieve
complex folds with precisely defined structural and dynamic properties. The rational design …

Constructing ion channels from water-soluble α-helical barrels

AJ Scott, A Niitsu, HT Kratochvil, EJM Lang… - Nature …, 2021 - nature.com
The design of peptides that assemble in membranes to form functional ion channels is
challenging. Specifically, hydrophobic interactions must be designed between the peptides …

Accurate computational design of multipass transmembrane proteins

P Lu, D Min, F DiMaio, KY Wei, MD Vahey, SE Boyken… - Science, 2018 - science.org
The computational design of transmembrane proteins with more than one membrane-
spanning region remains a major challenge. We report the design of transmembrane …

Role of GxxxG motifs in transmembrane domain interactions

MG Teese, D Langosch - Biochemistry, 2015 - ACS Publications
Transmembrane (TM) helices of integral membrane proteins can facilitate strong and
specific noncovalent protein–protein interactions. Mutagenesis and structural analyses have …

Packing of apolar side chains enables accurate design of highly stable membrane proteins

M Mravic, JL Thomaston, M Tucker, PE Solomon, L Liu… - Science, 2019 - science.org
The features that stabilize the structures of membrane proteins remain poorly understood.
Polar interactions contribute modestly, and the hydrophobic effect contributes little to the …

Supramolecular transmembrane ion channels formed by multiblock amphiphiles

K Sato, T Muraoka, K Kinbara - Accounts of Chemical Research, 2021 - ACS Publications
Conspectus Transmembrane proteins located within biological membranes play a crucial
role in a variety of important cellular processes, such as energy conversion and signal …

Structural analysis of cross α-helical nanotubes provides insight into the designability of filamentous peptide nanomaterials

F Wang, O Gnewou, C Modlin, LC Beltran, C Xu… - Nature …, 2021 - nature.com
The exquisite structure-function correlations observed in filamentous protein assemblies
provide a paradigm for the design of synthetic peptide-based nanomaterials. However, the …

[HTML][HTML] Helix-helix interactions in membrane domains of bitopic proteins: Specificity and role of lipid environment

EV Bocharov, KS Mineev, KV Pavlov, SA Akimov… - … et Biophysica Acta (BBA …, 2017 - Elsevier
Interaction between transmembrane helices often determines biological activity of
membrane proteins. Bitopic proteins, a broad subclass of membrane proteins, form dimers …

Membrane receptor activation mechanisms and transmembrane peptide tools to elucidate them

JM Westerfield, FN Barrera - Journal of Biological Chemistry, 2020 - ASBMB
Single-pass membrane receptors contain extracellular domains that respond to external
stimuli and transmit information to intracellular domains through a single transmembrane …