Semiempirical quantum mechanical methods for noncovalent interactions for chemical and biochemical applications

AS Christensen, T Kubar, Q Cui, M Elstner - Chemical reviews, 2016 - ACS Publications
Semiempirical (SE) methods can be derived from either Hartree–Fock or density functional
theory by applying systematic approximations, leading to efficient computational schemes …

Density-functional tight-binding: basic concepts and applications to molecules and clusters

F Spiegelman, N Tarrat, J Cuny, L Dontot… - … in physics: X, 2020 - Taylor & Francis
The scope of this article is to present an overview of the Density Functional based Tight
Binding (DFTB) method and its applications. The paper introduces the basics of DFTB and …

Parameterization of DFTB3/3OB for sulfur and phosphorus for chemical and biological applications

M Gaus, X Lu, M Elstner, Q Cui - Journal of chemical theory and …, 2014 - ACS Publications
We report the parametrization of the approximate density functional tight binding method,
DFTB3, for sulfur and phosphorus. The parametrization is done in a framework consistent …

Large-scale computations in chemistry: a bird's eye view of a vibrant field

AV Akimov, OV Prezhdo - Chemical reviews, 2015 - ACS Publications
1.1. The Meaning of “Large Scale” In general, the term “large scale” can have one of the
following five meanings in computational chemistry:(1) large size: power-law and …

Embedding methods for quantum chemistry: applications from materials to life sciences

LO Jones, MA Mosquera, GC Schatz… - Journal of the American …, 2020 - ACS Publications
Quantum mechanical embedding methods hold the promise to transform not just the way
calculations are performed, but to significantly reduce computational costs and improve …

Density functional tight binding: values of semi-empirical methods in an ab initio era

Q Cui, M Elstner - Physical Chemistry Chemical Physics, 2014 - pubs.rsc.org
Semi-empirical (SE) methods are derived from Hartree–Fock (HF) or Density Functional
Theory (DFT) by neglect and approximation of electronic integrals. Thereby, parameters are …

Beyond Born–Mayer: Improved models for short-range repulsion in ab initio force fields

MJ Van Vleet, AJ Misquitta, AJ Stone… - Journal of chemical …, 2016 - ACS Publications
Short-range repulsion within intermolecular force fields is conventionally described by either
Lennard-Jones (A/r 12) or Born–Mayer (A exp (− Br)) forms. Despite their widespread use …

Three pillars for achieving quantum mechanical molecular dynamics simulations of huge systems: Divide‐and‐conquer, density‐functional tight‐binding, and …

H Nishizawa, Y Nishimura, M Kobayashi… - Journal of …, 2016 - Wiley Online Library
The linear‐scaling divide‐and‐conquer (DC) quantum chemical methodology is applied to
the density‐functional tight‐binding (DFTB) theory to develop a massively parallel program …

Molecular simulation of water and hydration effects in different environments: Challenges and developments for DFTB based models

P Goyal, HJ Qian, S Irle, X Lu, D Roston… - The Journal of …, 2014 - ACS Publications
We discuss the description of water and hydration effects that employs an approximate
density functional theory, DFTB3, in either a full QM or QM/MM framework. The goal is to …

Perspective: Quantum mechanical methods in biochemistry and biophysics

Q Cui - The Journal of chemical physics, 2016 - pubs.aip.org
In this perspective article, I discuss several research topics relevant to quantum mechanical
(QM) methods in biophysical and biochemical applications. Due to the immense complexity …