[HTML][HTML] Integrated multiplex network based approach for hub gene identification in oral cancer

S Mahapatra, R Bhuyan, J Das, T Swarnkar - Heliyon, 2021 - cell.com
Abstract Background: The incidence of Oral Cancer (OC) is high in Asian countries, which
goes undetected at its early stage. The study of genetics, especially genetic networks holds …

[HTML][HTML] aiGeneR 1.0: An Artificial Intelligence Technique for the Revelation of Informative and Antibiotic Resistant Genes in Escherichia coli

DSK Nayak, S Mahapatra, SP Routray… - Frontiers in Bioscience …, 2024 - imrpress.com
Background: There are several antibiotic resistance genes (ARG) for the Escherichia coli (E.
coli) bacteria that cause urinary tract infections (UTI), and it is therefore important to identify …

Weighted gene coexpression network analysis identifies a new biomarker of CENPF for prediction disease prognosis and progression in nonmuscle invasive bladder …

J Shi, P Zhang, L Liu, X Min… - Molecular Genetics & …, 2019 - Wiley Online Library
Background The dreadful prognosis of nonmuscle invasive bladder cancer mainly results
from the delay in recognition of individuals with a high risk of progression. Thus, the …

Integrative biomarker detection on high-dimensional gene expression data sets: a survey on prior knowledge approaches

C Perscheid - Briefings in bioinformatics, 2021 - academic.oup.com
Gene expression data provide the expression levels of tens of thousands of genes from
several hundred samples. These data are analyzed to detect biomarkers that can be of …

ReCuRandom: A hybrid machine learning model for significant gene identification

DSK Nayak, A Pati, A Panigrahi, S Sahoo… - AIP Conference …, 2023 - pubs.aip.org
The method of evaluating the physical traits of living creatures by generating essential
proteins is known as gene expression. Translation and transcription are the two processes …

[HTML][HTML] Network‑based identification of signature genes KLF6 and SPOCK1 associated with oral submucous fibrosis

P Singh, A Rai, R Dohare, S Arora… - Molecular and …, 2020 - spandidos-publications.com
The molecular mechanism of oral submucous fibrosis (OSF) is yet to be fully elucidated. The
identification of reliable signature genes to screen patients with a high risk of OSF and to …

[HTML][HTML] DM-MOGA: a multi-objective optimization genetic algorithm for identifying disease modules of non-small cell lung cancer

J Shang, X Zhu, Y Sun, F Li, X Kong, JX Liu - BMC bioinformatics, 2023 - Springer
Background Constructing molecular interaction networks from microarray data and then
identifying disease module biomarkers can provide insight into the underlying pathogenic …

A neural network framework for predicting Adenocarcinoma cancer using high-throughput gene expression data

S Mohanty, DSK Nayak, T Swarnkar - AIP Conference Proceedings, 2023 - pubs.aip.org
Machine learning is a part of artificial intelligence and its optimization techniques are allows
system to learn from past example and identify pattern from large dataset. This criteria are …

TransNeT-CGP: A cluster-based comorbid gene prioritization by integrating transcriptomics and network-topological features

KR Saranya, ER Vimina, FR Pinto - Computational Biology and Chemistry, 2024 - Elsevier
The local disruptions caused by the genes of one disease can influence the pathways
associated with the other diseases resulting in comorbidity. For gene therapies, it is …

Identification of ESCC potential biomarkers using biclustering algorithms

B Baruah, MP Dutta, DK Bhattacharyya - Gene Reports, 2022 - Elsevier
An extensive empirical study is presented in this work to identify potential biomarkers of
ESCC by employing fifteen prominent biclustering algorithms on synthetic and real datasets …