Theory of protein folding: the energy landscape perspective

JN Onuchic, Z Luthey-Schulten… - Annual review of …, 1997 - annualreviews.org
▪ Abstract The energy landscape theory of protein folding is a statistical description of a
protein's potential surface. It assumes that folding occurs through organizing an ensemble of …

The protein folding 'speed limit'

J Kubelka, J Hofrichter, WA Eaton - Current opinion in structural biology, 2004 - Elsevier
How fast can a protein possibly fold? This question has stimulated experimentalists to seek
fast folding proteins and to engineer them to fold even faster. Proteins folding at or near the …

Contact order, transition state placement and the refolding rates of single domain proteins

KW Plaxco, KT Simons, D Baker - Journal of molecular biology, 1998 - Elsevier
Theoretical studies have suggested relationships between the size, stability and topology of
a protein fold and the rate and mechanisms by which it is achieved. The recent …

Conformational selection or induced fit: a flux description of reaction mechanism

GG Hammes, YC Chang… - Proceedings of the …, 2009 - National Acad Sciences
The mechanism of ligand binding coupled to conformational changes in macromolecules
has recently attracted considerable interest. The 2 limiting cases are the “induced fit” …

How do small single-domain proteins fold?

SE Jackson - Folding and Design, 1998 - cell.com
Many small, monomeric proteins fold with simple two-state kinetics and show wide variation
in folding rates, from microseconds to seconds. Thus, stable intermediates are not a …

Unfolded proteins and protein folding studied by NMR

HJ Dyson, PE Wright - Chemical reviews, 2004 - ACS Publications
Preparation of biological macromolecules in the pure state requires that cells be disrupted,
releasing and mixing the contents. Only the most stable and highly structured molecules can …

Contact order revisited: influence of protein size on the folding rate

DN Ivankov, SO Garbuzynskiy, E Alm… - Protein …, 2003 - Wiley Online Library
Guided by the recent success of empirical model predicting the folding rates of small two‐
state folding proteins from the relative contact order (CO) of their native structures, by a …

Fast kinetics and mechanisms in protein folding

WA Eaton, V Muñoz, SJ Hagen, GS Jas… - Annual review of …, 2000 - annualreviews.org
▪ Abstract This review describes how kinetic experiments using techniques with dramatically
improved time resolution have contributed to understanding mechanisms in protein folding …

Protein folding intermediates and pathways studied by hydrogen exchange

SW Englander - Annual review of biophysics and biomolecular …, 2000 - annualreviews.org
▪ Abstract In order to solve the immensely difficult protein-folding problem, it will be
necessary to characterize the barriers that slow folding and the intermediate structures that …

Transition-state structure as a unifying basis in protein-folding mechanisms: contact order, chain topology, stability, and the extended nucleus mechanism

AR Fersht - Proceedings of the National Academy of …, 2000 - National Acad Sciences
I attempt to reconcile apparently conflicting factors and mechanisms that have been
proposed to determine the rate constant for two-state folding of small proteins, on the basis …