Bacterial microbiota in different types of processed meat products: diversity, adaptation, and co-occurrence

Q Huang, H Zhang, L Zhang, B Xu - Critical Reviews in Food …, 2023 - Taylor & Francis
As a double-edged sword, some bacterial microbes can improve the quality and shelf life of
meat products, but others mainly responsible for deterioration of the safety and quality of …

Illuminating function of the understudied druggable kinome

SM Gomez, AD Axtman, TM Willson, MB Major… - Drug Discovery …, 2024 - Elsevier
Highlights•There are more than 500 protein kinases in the human kinome of which 162 have
been identified as understudied.•Assays were developed for quantitative measure of kinase …

MatKG: An autonomously generated knowledge graph in Material Science

V Venugopal, E Olivetti - Scientific Data, 2024 - nature.com
In this paper, we present MatKG, a knowledge graph in materials science that offers a
repository of entities and relationships extracted from scientific literature. Using advanced …

Prediction and curation of missing biomedical identifier mappings with Biomappings

CT Hoyt, AL Hoyt, BM Gyori - Bioinformatics, 2023 - academic.oup.com
Motivation Biomedical identifier resources (such as ontologies, taxonomies, and controlled
vocabularies) commonly overlap in scope and contain equivalent entries under different …

WWAD: the most comprehensive small molecule World Wide Approved Drug database of therapeutics

P Savosina, D Druzhilovskiy, D Filimonov… - Frontiers in …, 2024 - frontiersin.org
Every year, more than 50 new therapeutic agents are approved for medical use worldwide.
Despite the increase in the number of biologics approvals, the majority of drugs currently …

Beyond protein lists: AI-assisted interpretation of proteomic investigations in the context of evolving scientific knowledge

BM Gyori, O Vitek - nature methods, 2024 - nature.com
Mass spectrometry-based proteomics provides broad and quantitative detection of the
proteome, but its results are mostly presented as protein lists. Artificial intelligence …

Comparative performance evaluation of large language models for extracting molecular interactions and pathway knowledge

G Park, BJ Yoon, X Luo, V López-Marrero… - arXiv preprint arXiv …, 2023 - arxiv.org
Understanding protein interactions and pathway knowledge is crucial for unraveling the
complexities of living systems and investigating the underlying mechanisms of biological …

Nociceptor-immune interactomes reveal insult-specific immune signatures of pain

A Jain, BM Gyori, S Hakim, A Jain, L Sun… - Nature …, 2024 - nature.com
Inflammatory pain results from the heightened sensitivity and reduced threshold of
nociceptor sensory neurons due to exposure to inflammatory mediators. However, the …

A regulatory pathway model of neuropsychological disruption in Havana syndrome

TP Chacko, JT Toole, MC Morris, J Page… - Frontiers in …, 2023 - frontiersin.org
Introduction In 2016 diplomatic personnel serving in Havana, Cuba, began reporting audible
sensory phenomena paired with onset of complex and persistent neurological symptoms …

Nociceptor neuroimmune interactomes reveal cell type-and injury-specific inflammatory pain pathways

A Jain, BM Gyori, S Hakim, S Bunga, DG Taub… - BioRxiv, 2023 - biorxiv.org
Inflammatory pain associated with tissue injury and infections, results from the heightened
sensitivity of the peripheral terminals of nociceptor sensory neurons in response to exposure …