Computer aided selection of candidate vaccine antigens

DR Flower, IK Macdonald, K Ramakrishnan… - Immunome …, 2010 - Springer
Immunoinformatics is an emergent branch of informatics science that long ago pullulated
from the tree of knowledge that is bioinformatics. It is a discipline which applies informatic …

Mutations in the mitochondrial methionyl-tRNA synthetase cause a neurodegenerative phenotype in flies and a recessive ataxia (ARSAL) in humans

V Bayat, I Thiffault, M Jaiswal, M Tétreault, T Donti… - PLoS …, 2012 - journals.plos.org
An increasing number of genes required for mitochondrial biogenesis, dynamics, or function
have been found to be mutated in metabolic disorders and neurological diseases such as …

Whole genome comparative analysis of CpG islands in camelid and other mammalian genomes

A Barazandeh, M Mohammadabadi… - Mammalian Biology, 2019 - Elsevier
Camels bear unique genotypes and phenotypes for adaptation in their environment, and as
such could be very useful in the weather extremes accelerated by global climate change …

The integration of epigenetics and genetics in nutrition research for CVD risk factors

Y Ma, JM Ordovas - Proceedings of the Nutrition Society, 2017 - cambridge.org
There is increasing evidence documenting gene-by-environment (G× E) interactions for
CVD related traits. However, the underlying mechanisms are still unclear. DNA methylation …

QDMR: a quantitative method for identification of differentially methylated regions by entropy

Y Zhang, H Liu, J Lv, X Xiao, J Zhu, X Liu… - Nucleic acids …, 2011 - academic.oup.com
DNA methylation plays critical roles in transcriptional regulation and chromatin remodeling.
Differentially methylated regions (DMRs) have important implications for development, aging …

[HTML][HTML] Predicting CpG islands and their relationship with genomic feature in cattle by hidden markov model algorithm

A Barazandeh, MR Mohammadabadi… - Iranian Journal of …, 2016 - journals.iau.ir
Cattle supply an important source of nutrition for humans in the world. CpG islands (CGIs)
are very important and useful, as they carry functionally relevant epigenetic loci for whole …

DiseaseMeth: a human disease methylation database

J Lv, H Liu, J Su, X Wu, H Liu, B Li, X Xiao… - Nucleic acids …, 2012 - academic.oup.com
DNA methylation is an important epigenetic modification for genomic regulation in higher
organisms that plays a crucial role in the initiation and progression of diseases. The …

[HTML][HTML] Genome-wide analysis of CpG islands in some livestock genomes and their relationship with genomic features Original Paper

A Barazandeh… - Czech Journal of …, 2016 - cjas.agriculturejournals.cz
CpG islands (CGIs) are an important group of CpG dinucleotides in the guanine-and
cytosine-rich regions as they harbour functionally relevant epigenetic loci for whole genome …

Long non-coding RNA identification over mouse brain development by integrative modeling of chromatin and genomic features

J Lv, H Liu, Z Huang, J Su, H He, Y Xiu… - Nucleic acids …, 2013 - academic.oup.com
In silico prediction of genomic long non-coding RNAs (lncRNAs) is prerequisite to the
construction and elucidation of non-coding regulatory network. Chromatin modifications …

CpG_MPs: identification of CpG methylation patterns of genomic regions from high-throughput bisulfite sequencing data

J Su, H Yan, Y Wei, H Liu, H Liu, F Wang… - Nucleic acids …, 2013 - academic.oup.com
High-throughput bisulfite sequencing is widely used to measure cytosine methylation at
single-base resolution in eukaryotes. It permits systems-level analysis of genomic …