Performance and application of 16S rRNA gene cycle sequencing for routine identification of bacteria in the clinical microbiology laboratory

DL Church, L Cerutti, A Gürtler, T Griener… - Clinical microbiology …, 2020 - Am Soc Microbiol
This review provides a state-of-the-art description of the performance of Sanger cycle
sequencing of the 16S rRNA gene for routine identification of bacteria in the clinical …

[HTML][HTML] Members of the genus Burkholderia: good and bad guys

L Eberl, P Vandamme - F1000Research, 2016 - ncbi.nlm.nih.gov
In the 1990s several biocontrol agents on that contained Burkholderia strains were
registered by the United States Environmental Protection Agency (EPA). After risk …

Analysis of 1,000+ Type-Strain Genomes Substantially Improves Taxonomic Classification of Alphaproteobacteria

A Hördt, MG López, JP Meier-Kolthoff… - Frontiers in …, 2020 - frontiersin.org
The class Alphaproteobacteria is comprised of a diverse assemblage of Gram-negative
bacteria that includes organisms of varying morphologies, physiologies and habitat …

Bacterial community dynamics are linked to patterns of coral heat tolerance

M Ziegler, FO Seneca, LK Yum, SR Palumbi… - Nature …, 2017 - nature.com
Ocean warming threatens corals and the coral reef ecosystem. Nevertheless, corals can be
adapted to their thermal environment and inherit heat tolerance across generations. In …

The changing microbial epidemiology in cystic fibrosis

JJ LiPuma - Clinical microbiology reviews, 2010 - Am Soc Microbiol
Infection of the airways remains the primary cause of morbidity and mortality in persons with
cystic fibrosis (CF). This review describes salient features of the epidemiologies of microbial …

Airway microbiota and bronchial hyperresponsiveness in patients with suboptimally controlled asthma

YJ Huang, CE Nelson, EL Brodie, TZ DeSantis… - Journal of Allergy and …, 2011 - Elsevier
BACKGROUND: Improvement in lung function after macrolide antibiotic therapy has been
attributed to reduction in bronchial infection by specific bacteria. However, the airway might …

[HTML][HTML] Then and now: use of 16S rDNA gene sequencing for bacterial identification and discovery of novel bacteria in clinical microbiology laboratories

PCY Woo, SKP Lau, JLL Teng, H Tse… - Clinical Microbiology and …, 2008 - Elsevier
In the last decade, as a result of the widespread use of PCR and DNA sequencing, 16S
rDNA sequencing has played a pivotal role in the accurate identification of bacterial isolates …

Burkholderia: an update on taxonomy and biotechnological potential as antibiotic producers

E Depoorter, MJ Bull, C Peeters, T Coenye… - Applied microbiology …, 2016 - Springer
Burkholderia is an incredibly diverse and versatile Gram-negative genus, within which over
80 species have been formally named and multiple other genotypic groups likely represent …

Huanglongbing impairs the rhizosphere-to-rhizoplane enrichment process of the citrus root-associated microbiome

Y Zhang, J Xu, N Riera, T Jin, J Li, N Wang - Microbiome, 2017 - Springer
Background Roots are the primary site for plant-microbe interactions. Among the three root-
associated layers (ie, rhizosphere, rhizoplane, and endorhiza), the rhizoplane is a key …

Clinical significance of microbial infection and adaptation in cystic fibrosis

AR Hauser, M Jain, M Bar-Meir… - Clinical microbiology …, 2011 - Am Soc Microbiol
SUMMARY A select group of microorganisms inhabit the airways of individuals with cystic
fibrosis. Once established within the pulmonary environment in these patients, many of …