Decoding aging hallmarks at the single-cell level

S Ma, X Chi, Y Cai, Z Ji, S Wang, J Ren… - Annual Review of …, 2023 - annualreviews.org
Organismal aging exhibits wide-ranging hallmarks in divergent cell types across tissues,
organs, and systems. The advancement of single-cell technologies and generation of rich …

[HTML][HTML] Single-cell and spatial transcriptomics: Advances in heart development and disease applications

X Long, X Yuan, J Du - Computational and structural biotechnology journal, 2023 - Elsevier
Current transcriptomics technologies, including bulk RNA-seq, single-cell RNA sequencing
(scRNA-seq), single-nucleus RNA-sequencing (snRNA-seq), and spatial transcriptomics …

Single-cell lineage capture across genomic modalities with CellTag-multi reveals fate-specific gene regulatory changes

K Jindal, MT Adil, N Yamaguchi, X Yang… - Nature …, 2024 - nature.com
Complex gene regulatory mechanisms underlie differentiation and reprogramming.
Contemporary single-cell lineage-tracing (scLT) methods use expressed, heritable DNA …

Aging Fly Cell Atlas identifies exhaustive aging features at cellular resolution

TC Lu, M Brbić, YJ Park, T Jackson, J Chen, SS Kolluru… - Science, 2023 - science.org
Aging is characterized by a decline in tissue function, but the underlying changes at cellular
resolution across the organism remain unclear. Here, we present the Aging Fly Cell Atlas, a …

A global view of aging and Alzheimer's pathogenesis-associated cell population dynamics and molecular signatures in human and mouse brains

A Sziraki, Z Lu, J Lee, G Banyai, S Anderson… - Nature Genetics, 2023 - nature.com
Conventional methods fall short in unraveling the dynamics of rare cell types related to
aging and diseases. Here we introduce EasySci, an advanced single-cell combinatorial …

Benchmarking strategies for cross-species integration of single-cell RNA sequencing data

Y Song, Z Miao, A Brazma, I Papatheodorou - Nature Communications, 2023 - nature.com
The growing number of available single-cell gene expression datasets from different species
creates opportunities to explore evolutionary relationships between cell types across …

Cell type evolution reconstruction across species through cell phylogenies of single-cell RNA sequencing data

JL Mah, CW Dunn - Nature Ecology & Evolution, 2024 - nature.com
The origin and evolution of cell types has emerged as a key topic in evolutionary biology.
Driven by rapidly accumulating single-cell datasets, recent attempts to infer cell type …

SON is an essential m6A target for hematopoietic stem cell fate

H Luo, M Cortés-López, CL Tam, M Xiao, I Wakiro… - Cell Stem Cell, 2023 - cell.com
Stem cells regulate their self-renewal and differentiation fate outcomes through both
symmetric and asymmetric divisions. m 6 A RNA methylation controls symmetric commitment …

Entry receptor LDLRAD3 is required for Venezuelan equine encephalitis virus peripheral infection and neurotropism leading to pathogenesis in mice

NM Kafai, H Janova, MD Cain, Y Alippe, S Muraro… - Cell reports, 2023 - cell.com
Venezuelan equine encephalitis virus (VEEV) is an encephalitic alphavirus responsible for
epidemics of neurological disease across the Americas. Low-density lipoprotein receptor …

Molecular traces of Drosophila hemocytes reveal transcriptomic conservation with vertebrate myeloid cells

SH Yoon, B Cho, D Lee, H Kim, J Shim, JW Nam - PLoS Genetics, 2023 - journals.plos.org
Drosophila hemocytes serve as the primary defense system against harmful threats,
allowing the animals to thrive. Hemocytes are often compared to vertebrate innate immune …