Control of anterior GR adient 2 (AGR 2) dimerization links endoplasmic reticulum proteostasis to inflammation

M Maurel, J Obacz, T Avril, YP Ding… - EMBO molecular …, 2019 - embopress.org
Abstract Anterior gradient 2 (AGR 2) is a dimeric protein disulfide isomerase family member
involved in the regulation of protein quality control in the endoplasmic reticulum (ER). Mouse …

Analyzing and visualizing genomic complexity for the derivation of the emergent molecular networks

T Koutsandreas, I Binenbaum, E Pilalis… - International Journal of …, 2016 - igi-global.com
Modern genomic studies, accumulation of biological information in repositories, plus novel
analytical and data-mining methodologies, comprise the backbone for the holistic …

Bioinformatic analysis reveals a pattern of STAT3-associated gene expression specific to basal-like breast cancers in human tumors

RW Tell, CM Horvath - … of the National Academy of Sciences, 2014 - National Acad Sciences
Signal transducer and activator of transcription 3 (STAT3), a latent transcription factor
associated with inflammatory signaling and innate and adaptive immune responses, is …

ANASTASIA: an automated metagenomic analysis pipeline for novel enzyme discovery exploiting next generation sequencing data

T Koutsandreas, E Ladoukakis, E Pilalis… - Frontiers in …, 2019 - frontiersin.org
Metagenomic analysis of environmental samples provides deep insight into the enzymatic
mixture of the corresponding niches, capable of revealing peptide sequences with novel …

[HTML][HTML] The KLK5 protease suppresses breast cancer by repressing the mevalonate pathway

G Pampalakis, O Obasuyi, O Papadodima… - Oncotarget, 2014 - ncbi.nlm.nih.gov
Abstract Kallikrein-related peptidase 5 (KLK5) displays aberrant expression in cancer.
However, any functional association is missing. Here, we show that reconstitution of KLK5 …

Comparative Meta‐Analysis of Transcriptomics Data during Cellular Senescence and In Vivo Tissue Ageing

K Voutetakis, A Chatziioannou… - Oxidative Medicine …, 2015 - Wiley Online Library
Several studies have employed DNA microarrays to identify gene expression signatures that
mark human ageing; yet the features underlying this complicated phenomenon remain …

A comparative genomic study in schizophrenic and in bipolar disorder patients, based on microarray expression profiling meta‐analysis

M Logotheti, O Papadodima… - The Scientific world …, 2013 - Wiley Online Library
Schizophrenia affecting almost 1% and bipolar disorder affecting almost 3%–5% of the
global population constitute two severe mental disorders. The catecholaminergic and the …

A computational pipeline for the extraction of actionable biological information from NGS-phage display experiments

A Vekris, E Pilalis, A Chatziioannou… - Frontiers in Physiology, 2019 - frontiersin.org
Phage Display is a powerful method for the identification of peptide binding to targets of
variable complexities and tissues, from unique molecules to the internal surfaces of vessels …

[HTML][HTML] KENeV: a web-application for the automated reconstruction and visualization of the enriched metabolic and signaling super-pathways deriving from genomic …

E Pilalis, T Koutsandreas, I Valavanis… - Computational and …, 2015 - Elsevier
Gene expression analysis, using high throughput genomic technologies, has become an
indispensable step for the meaningful interpretation of the underlying molecular complexity …

Gene expression analysis of fibroblasts from patients with bipolar disorder

M Logotheti, O Papadodima… - … & Mental Health, 2015 - diva-portal.org
Bipolar disorder is a severe, lifelong psychiatric disease. The main underlying
pathophysiology of the disease is still incomprehensible. Various studies have suggested …