[HTML][HTML] Beyond the exome: what's next in diagnostic testing for Mendelian conditions

MH Wojcik, CM Reuter, S Marwaha… - The American Journal of …, 2023 - cell.com
Despite advances in clinical genetic testing, including the introduction of exome sequencing
(ES), more than 50% of individuals with a suspected Mendelian condition lack a precise …

Detection of aberrant gene expression events in RNA sequencing data

VA Yépez, C Mertes, MF Müller, D Klaproth-Andrade… - Nature protocols, 2021 - nature.com
RNA sequencing (RNA-seq) has emerged as a powerful approach to discover disease-
causing gene regulatory defects in individuals affected by genetically undiagnosed rare …

Recommendations for clinical interpretation of variants found in non-coding regions of the genome

JM Ellingford, JW Ahn, RD Bagnall, D Baralle… - Genome medicine, 2022 - Springer
Background The majority of clinical genetic testing focuses almost exclusively on regions of
the genome that directly encode proteins. The important role of variants in non-coding …

Aberrant splicing prediction across human tissues

N Wagner, MH Çelik, FR Hölzlwimmer, C Mertes… - Nature …, 2023 - nature.com
Aberrant splicing is a major cause of genetic disorders but its direct detection in
transcriptomes is limited to clinically accessible tissues such as skin or body fluids. While …

Clinical implementation of RNA sequencing for Mendelian disease diagnostics

VA Yépez, M Gusic, R Kopajtich, C Mertes, NH Smith… - Genome medicine, 2022 - Springer
Background Lack of functional evidence hampers variant interpretation, leaving a large
proportion of individuals with a suspected Mendelian disorder without genetic diagnosis …

Transcriptome-directed analysis for Mendelian disease diagnosis overcomes limitations of conventional genomic testing

DR Murdock, H Dai, LC Burrage… - The Journal of …, 2021 - Am Soc Clin Investig
BACKGROUND Transcriptome sequencing (RNA-seq) improves diagnostic rates in
individuals with suspected Mendelian conditions to varying degrees, primarily by directing …

Detection of aberrant splicing events in RNA-seq data using FRASER

C Mertes, IF Scheller, VA Yépez, MH Çelik… - Nature …, 2021 - nature.com
Aberrant splicing is a major cause of rare diseases. However, its prediction from genome
sequence alone remains in most cases inconclusive. Recently, RNA sequencing has proven …

[HTML][HTML] Standardized practices for RNA diagnostics using clinically accessible specimens reclassifies 75% of putative splicing variants

AM Bournazos, LG Riley, S Bommireddipalli, L Ades… - Genetics in …, 2022 - Elsevier
Purpose Genetic variants causing aberrant premessenger RNA splicing are increasingly
being recognized as causal variants in genetic disorders. In this study, we devise …

Splicing in the diagnosis of rare disease: advances and challenges

J Lord, D Baralle - Frontiers in genetics, 2021 - frontiersin.org
Mutations which affect splicing are significant contributors to rare disease, but are frequently
overlooked by diagnostic sequencing pipelines. Greater ascertainment of pathogenic …

Trio RNA sequencing in a cohort of medically complex children

AR Deshwar, KE Yuki, H Hou, Y Liang, T Khan… - The American Journal of …, 2023 - cell.com
Genome sequencing (GS) is a powerful test for the diagnosis of rare genetic disorders.
Although GS can enumerate most non-coding variation, determining which non-coding …