Nonspecific binding—fundamental concepts and consequences for biosensing applications

A Frutiger, A Tanno, S Hwu, RF Tiefenauer… - Chemical …, 2021 - ACS Publications
Nature achieves differentiation of specific and nonspecific binding in molecular interactions
through precise control of biomolecules in space and time. Artificial systems such as …

Water determines the structure and dynamics of proteins

MC Bellissent-Funel, A Hassanali, M Havenith… - Chemical …, 2016 - ACS Publications
Water is an essential participant in the stability, structure, dynamics, and function of proteins
and other biomolecules. Thermodynamically, changes in the aqueous environment affect …

Complete protein–protein association kinetics in atomic detail revealed by molecular dynamics simulations and Markov modelling

N Plattner, S Doerr, G De Fabritiis, F Noé - Nature chemistry, 2017 - nature.com
Protein–protein association is fundamental to many life processes. However, a microscopic
model describing the structures and kinetics during association and dissociation is lacking …

The hydrophobic effect revisited—studies with supramolecular complexes imply high‐energy water as a noncovalent driving force

F Biedermann, WM Nau… - Angewandte Chemie …, 2014 - Wiley Online Library
Traditional descriptions of the hydrophobic effect on the basis of entropic arguments or the
calculation of solvent‐occupied surfaces must be questioned in view of new results obtained …

On the binding affinity of macromolecular interactions: daring to ask why proteins interact

PL Kastritis, AMJJ Bonvin - Journal of The Royal Society …, 2013 - royalsocietypublishing.org
Interactions between proteins are orchestrated in a precise and time-dependent manner,
underlying cellular function. The binding affinity, defined as the strength of these …

Computational prediction of protein–protein binding affinities

T Siebenmorgen, M Zacharias - Wiley Interdisciplinary Reviews …, 2020 - Wiley Online Library
Protein–protein interactions form central elements of almost all cellular processes.
Knowledge of the structure of protein–protein complexes but also of the binding affinity is of …

Protein-based bioactive coatings: from nanoarchitectonics to applications

C Fu, Z Wang, X Zhou, B Hu, C Li, P Yang - Chemical Society Reviews, 2024 - pubs.rsc.org
Protein-based bioactive coatings have emerged as a versatile and promising strategy for
enhancing the performance and biocompatibility of diverse biomedical materials and …

Atomic-level characterization of protein–protein association

AC Pan, D Jacobson, K Yatsenko… - Proceedings of the …, 2019 - National Acad Sciences
Despite the biological importance of protein–protein complexes, determining their structures
and association mechanisms remains an outstanding challenge. Here, we report the results …

Molecular docking as a popular tool in drug design, an in silico travel

J De Ruyck, G Brysbaert, R Blossey… - … and Applications in …, 2016 - Taylor & Francis
New molecular modeling approaches, driven by rapidly improving computational platforms,
have allowed many success stories for the use of computer-assisted drug design in the …

Universal reduction in dielectric response of confined fluids

MH Motevaselian, NR Aluru - ACS nano, 2020 - ACS Publications
Dielectric permittivity is central to many biological and physiochemical systems, as it affects
the long-range electrostatic interactions. Similar to many fluid properties, confinement …