Analysing biological pathways in genome-wide association studies

K Wang, M Li, H Hakonarson - Nature Reviews Genetics, 2010 - nature.com
Genome-wide association (GWA) studies have typically focused on the analysis of single
markers, which often lacks the power to uncover the relatively small effect sizes conferred by …

[HTML][HTML] Gene set analysis of genome-wide association studies: methodological issues and perspectives

L Wang, P Jia, RD Wolfinger, X Chen, Z Zhao - Genomics, 2011 - Elsevier
Recent studies have demonstrated that gene set analysis, which tests disease association
with genetic variants in a group of functionally related genes, is a promising approach for …

GATES: a rapid and powerful gene-based association test using extended Simes procedure

MX Li, HS Gui, JSH Kwan, PC Sham - The American Journal of Human …, 2011 - cell.com
The gene has been proposed as an attractive unit of analysis for association studies, but a
simple yet valid, powerful, and sufficiently fast method of evaluating the statistical …

Brain imaging genomics: integrated analysis and machine learning

L Shen, PM Thompson - Proceedings of the IEEE, 2019 - ieeexplore.ieee.org
Brain imaging genomics is an emerging data science field, where integrated analysis of
brain imaging and genomics data, often combined with other biomarker, clinical, and …

Discovering genetic associations with high-dimensional neuroimaging phenotypes: A sparse reduced-rank regression approach

M Vounou, TE Nichols, G Montana… - Neuroimage, 2010 - Elsevier
There is growing interest in performing genome-wide searches for associations between
genetic variants and brain imaging phenotypes. While much work has focused on single …

A review of multivariate analyses in imaging genetics

J Liu, VD Calhoun - Frontiers in neuroinformatics, 2014 - frontiersin.org
Recent advances in neuroimaging technology and molecular genetics provide the unique
opportunity to investigate genetic influence on the variation of brain attributes. Since the year …

Voxelwise gene-wide association study (vGeneWAS): multivariate gene-based association testing in 731 elderly subjects

DP Hibar, JL Stein, O Kohannim, N Jahanshad… - Neuroimage, 2011 - Elsevier
Imaging traits provide a powerful and biologically relevant substrate to examine the
influence of genetics on the brain. Interest in genome-wide, brain-wide search for influential …

Network-assisted analysis to prioritize GWAS results: principles, methods and perspectives

P Jia, Z Zhao - Human genetics, 2014 - Springer
Genome-wide association studies (GWAS) have rapidly become a powerful tool in genetic
studies of complex diseases and traits. Traditionally, single marker-based tests have been …

[HTML][HTML] A principal component regression based genome wide analysis approach reveals the presence of a novel QTL on BTA7 for MAP resistance in holstein cattle

SD Pant, FS Schenkel, CP Verschoor, Q You… - Genomics, 2010 - Elsevier
Bovine Johne's disease (JD), caused by Mycobacterium avium spp. paratuberculosis (MAP),
causes significant losses to the dairy and beef cattle industries. Effective vaccination or …

An adaptive association test for multiple phenotypes with GWAS summary statistics

J Kim, Y Bai, W Pan - Genetic epidemiology, 2015 - Wiley Online Library
We study the problem of testing for single marker‐multiple phenotype associations based on
genome‐wide association study (GWAS) summary statistics without access to individual …