Replicative aging in pathogenic fungi

S Bhattacharya, T Bouklas, BC Fries - Journal of Fungi, 2020 - mdpi.com
Candida albicans, Candida auris, Candida glabrata, and Cryptococcus neoformans are
pathogenic yeasts which can cause systemic infections in immune-compromised as well as …

The systems biology of single-cell aging

R Song, EA Sarnoski, M Acar - Iscience, 2018 - cell.com
Aging is a leading cause of human morbidity and mortality, but efforts to slow or reverse its
effects are hampered by an incomplete understanding of its multi-faceted origins. Systems …

Common features of aging fail to occur in Drosophila raised without a bacterial microbiome

AK Shukla, K Johnson, E Giniger - Iscience, 2021 - cell.com
Lifespan is limited both by intrinsic decline in vigor with age and by accumulation of external
insults. There exists a general picture of the deficits of aging, one that is reflected in a pattern …

Sis2 regulates yeast replicative lifespan in a dose-dependent manner

TT Ölmez, DF Moreno, P Liu, ZM Johnson… - Nature …, 2023 - nature.com
Application of microfluidic platforms facilitated high-precision measurements of yeast
replicative lifespan (RLS); however, comparative quantification of lifespan across strain …

Fundamental characteristics of single-cell aging in diploid yeast

EA Sarnoski, R Song, E Ertekin, N Koonce, M Acar - IScience, 2018 - cell.com
Single-cell-level experimentation can elucidate key biological insights about cellular aging
that are masked in population-level studies. However, the extensive time requirement of …

The choice of the objective function in flux balance analysis is crucial for predicting replicative lifespans in yeast

B Schnitzer, L Österberg, M Cvijovic - PloS one, 2022 - journals.plos.org
Flux balance analysis (FBA) is a powerful tool to study genome-scale models of the cellular
metabolism, based on finding the optimal flux distributions over the network. While the …

Senolytics and the compression of late-life mortality

A Kowald, TBL Kirkwood - Experimental Gerontology, 2021 - Elsevier
Senescent cells play an important role in mammalian ageing and in the etiology of age-
related diseases. Treatment of mice with senolytics–drugs that selectively remove senescent …

Transcriptional drift in aging cells: A global decontroller

T Matsuzaki, C Weistuch, A de Graff, KA Dill… - Proceedings of the …, 2024 - pnas.org
As cells age, they undergo a remarkable global change: In transcriptional drift, hundreds of
genes become overexpressed while hundreds of others become underexpressed. Using …

Quantification methods of determining brewer's and pharmaceutical yeast cell viability: accuracy and impact of nanoparticles

M Eigenfeld, L Wittmann, R Kerpes… - Analytical and …, 2023 - Springer
For industrial processes, a fast, precise, and reliable method of determining the
physiological state of yeast cells, especially viability, is essential. However, an increasing …

Stochastic modeling of aging cells reveals how damage accumulation, repair, and cell-division asymmetry affect clonal senescence and population fitness

R Song, M Acar - BMC bioinformatics, 2019 - Springer
Background Asymmetry during cellular division, both in the uneven partitioning of damaged
cellular components and of cell volume, is a cell biological phenomenon experienced by …