Histone post-translational modifications—cause and consequence of genome function

G Millán-Zambrano, A Burton, AJ Bannister… - Nature Reviews …, 2022 - nature.com
Much has been learned since the early 1960s about histone post-translational modifications
(PTMs) and how they affect DNA-templated processes at the molecular level. This …

Multifactorial profiling of epigenetic landscapes at single-cell resolution using MulTI-Tag

MP Meers, G Llagas, DH Janssens, CA Codomo… - Nature …, 2023 - nature.com
Chromatin profiling at locus resolution uncovers gene regulatory features that define cell
types and developmental trajectories, but it remains challenging to map and compare …

Characterizing cellular heterogeneity in chromatin state with scCUT&Tag-pro

B Zhang, A Srivastava, E Mimitou, T Stuart… - Nature …, 2022 - nature.com
Technologies that profile chromatin modifications at single-cell resolution offer enormous
promise for functional genomic characterization, but the sparsity of the measurements and …

One genome, many cell states: epigenetic control of innate immunity

I Fraschilla, H Amatullah, KL Jeffrey - Current opinion in immunology, 2022 - Elsevier
Highlights•Chromatin dynamics regulate pattern, timing and magnitude of gene
expression.•Signal transduction downstream of TLR4 regulate histones for inducible gene …

Nanobody-tethered transposition enables multifactorial chromatin profiling at single-cell resolution

T Stuart, S Hao, B Zhang, L Mekerishvili… - Nature …, 2023 - nature.com
Chromatin states are functionally defined by a complex combination of histone
modifications, transcription factor binding, DNA accessibility and other factors. Current …

High-throughput single-cell epigenomic profiling by targeted insertion of promoters (TIP-seq)

DA Bartlett, V Dileep, T Handa, Y Ohkawa… - Journal of Cell …, 2021 - rupress.org
Chromatin profiling in single cells has been extremely challenging and almost exclusively
limited to histone proteins. In cases where single-cell methods have shown promise, many …

[HTML][HTML] It's all in the combination: decoding the epigenome for cancer research and diagnostics

N Furth, E Shema - Current opinion in genetics & development, 2022 - Elsevier
Genome regulation is governed by the dynamics of chromatin modifications. The extensive
and diverse array of DNA and histone modifications allow multiple elements to act …

In situ tools for chromatin structural epigenomics

S Henikoff, K Ahmad - Protein Science, 2022 - Wiley Online Library
Technological progress over the past 15 years has fueled an explosion in genome‐wide
chromatin profiling tools that take advantage of low‐cost short‐read sequencing …

Advances in single-cell multi-omics and application in cardiovascular research

X Zhang, H Qiu, F Zhang, S Ding - Frontiers in Cell and …, 2022 - frontiersin.org
With the development of ever more powerful and versatile high-throughput sequencing
techniques and innovative ways to capture single cells, mapping the multicellular tissues at …

Host epigenetic control of intestinal microbiota and inflammation

IR Fraschilla - 2022 - search.proquest.com
Inflammatory bowel disease (IBD) is a multifactorial disease that is shaped by a combination
of genetic mutations, the epigenome, and environmental variables, including commensal …