Nanopore sequencing: Review of potential applications in functional genomics

N Kono, K Arakawa - Development, growth & differentiation, 2019 - Wiley Online Library
Molecular biology has been led by various measurement technologies, and increased
throughput has developed omics analysis. The development of massively parallel …

Genomic selection for forest tree improvement: Methods, achievements and perspectives

VG Lebedev, TN Lebedeva, AI Chernodubov… - Forests, 2020 - mdpi.com
The breeding of forest trees is only a few decades old, and is a much more complicated,
longer, and expensive endeavor than the breeding of agricultural crops. One breeding cycle …

The numbers of fungi: Contributions from traditional taxonomic studies and challenges of metabarcoding

C Phukhamsakda, RH Nilsson, CS Bhunjun… - Fungal diversity, 2022 - Springer
The global diversity of fungi has been estimated using several different approaches. There is
somewhere between 2–11 million estimated species, but the number of formally described …

Oxford Nanopore sequencing: new opportunities for plant genomics?

K Dumschott, MHW Schmidt, HS Chawla… - Journal of …, 2020 - academic.oup.com
DNA sequencing was dominated by Sanger's chain termination method until the mid-2000s,
when it was progressively supplanted by new sequencing technologies that can generate …

High-quality chromosome-scale assembly of the walnut (Juglans regia L.) reference genome

A Marrano, M Britton, PA Zaini, AV Zimin… - …, 2020 - academic.oup.com
Background The release of the first reference genome of walnut (Juglans regia L.) enabled
many achievements in the characterization of walnut genetic and functional variation …

[HTML][HTML] Pharmaceutical resource discovery from traditional medicinal plants: Pharmacophylogeny and pharmacophylogenomics

D Hao, P Xiao - Chinese Herbal Medicines, 2020 - Elsevier
The worldwide botanical and medicinal culture diversity are astonishing and constitute a
Pierian spring for innovative drug R&D. Here, the latest awareness and the perspectives of …

Physiological and molecular responses to drought stress in teak (Tectona grandis Lf)

E Galeano, TS Vasconcelos, P Novais de Oliveira… - PLoS …, 2019 - journals.plos.org
Drought stress is an increasingly common and worrying phenomenon because it causes a
loss of production in both agriculture and forestry. Teak is a tropical tree which needs …

Gene and genome duplications in the evolution of chemodiversity: perspectives from studies of Lamiaceae

BR Lichman, GT Godden, CR Buell - Current opinion in plant biology, 2020 - Elsevier
Plants are reservoirs of extreme chemical diversity, yet biosynthetic pathways remain
underexplored in the majority of taxa. Access to improved, inexpensive genomic and …

Target SSR-Seq: a novel SSR genotyping technology associate with perfect SSRs in genetic analysis of cucumber varieties

J Yang, J Zhang, R Han, F Zhang, A Mao… - Frontiers in Plant …, 2019 - frontiersin.org
Simple sequence repeats (SSR)–also known as microsatellites–have been used extensively
in genetic analysis, fine mapping, quantitative trait locus (QTL) mapping, as well as marker …

A chromosome-level genome assembly reveals that tandem-duplicated CYP706V oxidase genes control oridonin biosynthesis in the shoot apex of Isodon rubescens

Y Sun, J Shao, H Liu, H Wang, G Wang, J Li, Y Mao… - Molecular Plant, 2023 - cell.com
The ent-kaurenoids (eg, oridonin and enmein) from the Isodon genus (Lamiaceae) are one
class of diterpenoids with rich structural diversity and intriguing pharmaceutical activity. In …