Network biology concepts in complex disease comorbidities

JX Hu, CE Thomas, S Brunak - Nature Reviews Genetics, 2016 - nature.com
The co-occurrence of diseases can inform the underlying network biology of shared and
multifunctional genes and pathways. In addition, comorbidities help to elucidate the effects …

Integrative approaches for finding modular structure in biological networks

K Mitra, AR Carvunis, SK Ramesh, T Ideker - Nature Reviews Genetics, 2013 - nature.com
A central goal of systems biology is to elucidate the structural and functional architecture of
the cell. To this end, large and complex networks of molecular interactions are being rapidly …

[HTML][HTML] Evidence for network evolution in an Arabidopsis interactome map

Arabidopsis Interactome Mapping … - Science (New York …, 2011 - ncbi.nlm.nih.gov
Plants have unique features that evolved in response to their environments and ecosystems.
A full account of the complex cellular networks that underlie plant-specific functions is still …

Evolution and functional cross‐talk of protein post‐translational modifications

P Beltrao, P Bork, NJ Krogan… - Molecular systems …, 2013 - embopress.org
Protein post‐translational modifications (PTM s) allow the cell to regulate protein activity and
play a crucial role in the response to changes in external conditions or internal states …

[HTML][HTML] Features of the biochemistry of Mycobacterium smegmatis, as a possible model for Mycobacterium tuberculosis

J Ranjitha, A Rajan, V Shankar - Journal of infection and public health, 2020 - Elsevier
An alternate host for mycobacteria is Mycobacterium smegmatis which is used frequently. It
is a directly budding eco-friendly organism not emulated as human infection. It is mainly …

Evolution of resilience in protein interactomes across the tree of life

M Zitnik, R Sosič, MW Feldman… - Proceedings of the …, 2019 - National Acad Sciences
Phenotype robustness to environmental fluctuations is a common biological phenomenon.
Although most phenotypes involve multiple proteins that interact with each other, the basic …

Network context and selection in the evolution to enzyme specificity

H Nam, NE Lewis, JA Lerman, DH Lee, RL Chang… - Science, 2012 - science.org
Enzymes are thought to have evolved highly specific catalytic activities from promiscuous
ancestral proteins. By analyzing a genome-scale model of Escherichia coli metabolism, we …

Microbial laboratory evolution in the era of genome‐scale science

TM Conrad, NE Lewis, BØ Palsson - Molecular systems biology, 2011 - embopress.org
Laboratory evolution studies provide fundamental biological insight through direct
observation of the evolution process. They not only enable testing of evolutionary theory and …

Evidence for Network Evolution in an Arabidopsis Interactome Map

Arabidopsis Interactome Mapping Consortium… - Science, 2011 - science.org
Plants have unique features that evolved in response to their environments and ecosystems.
A full account of the complex cellular networks that underlie plant-specific functions is still …

An Arabidopsis Transcriptional Regulatory Map Reveals Distinct Functional and Evolutionary Features of Novel Transcription Factors

J Jin, K He, X Tang, Z Li, L Lv, Y Zhao… - … biology and evolution, 2015 - academic.oup.com
Transcription factors (TFs) play key roles in both development and stress responses. By
integrating into and rewiring original systems, novel TFs contribute significantly to the …