What recent ribosome structures have revealed about the mechanism of translation

TM Schmeing, V Ramakrishnan - Nature, 2009 - nature.com
The high-resolution structures of ribosomal subunits published in 2000 have revolutionized
the field of protein translation. They facilitated the determination and interpretation of …

Frameshifting RNA pseudoknots: structure and mechanism

DP Giedroc, PV Cornish - Virus research, 2009 - Elsevier
Programmed ribosomal frameshifting (PRF) is one of the multiple translational recoding
processes that fundamentally alters triplet decoding of the messenger RNA by the …

Comparative protein structure modeling using MODELLER

B Webb, A Sali - Current protocols in bioinformatics, 2016 - Wiley Online Library
Comparative protein structure modeling predicts the three‐dimensional structure of a given
protein sequence (target) based primarily on its alignment to one or more proteins of known …

EMAN2: an extensible image processing suite for electron microscopy

G Tang, L Peng, PR Baldwin, DS Mann, W Jiang… - Journal of structural …, 2007 - Elsevier
EMAN is a scientific image processing package with a particular focus on single particle
reconstruction from transmission electron microscopy (TEM) images. It was first released in …

Flexible fitting of atomic structures into electron microscopy maps using molecular dynamics

LG Trabuco, E Villa, K Mitra, J Frank, K Schulten - Structure, 2008 - cell.com
A novel method to flexibly fit atomic structures into electron microscopy (EM) maps using
molecular dynamics simulations is presented. The simulations incorporate the EM data as …

[图书][B] Three-dimensional electron microscopy of macromolecular assemblies: visualization of biological molecules in their native state

J Frank - 2006 - books.google.com
Cryoelectron microscopy of biological molecules is among the hottest growth areas in
biophysics and structural biology at present, and Frank is arguably the most distinguished …

[图书][B] Coarse-graining of condensed phase and biomolecular systems

GA Voth - 2008 - taylorfrancis.com
Exploring recent developments in the field, Coarse-Graining of Condensed Phase and
Biomolecular Systems examines systematic ways of constructing coarse-grained …

Locking and unlocking of ribosomal motions

M Valle, A Zavialov, J Sengupta, U Rawat… - Cell, 2003 - cell.com
During the ribosomal translocation, the binding of elongation factor G (EF-G) to the
pretranslocational ribosome leads to a ratchet-like rotation of the 30S subunit relative to the …

Crystal structure of a 70S ribosome-tRNA complex reveals functional interactions and rearrangements

A Korostelev, S Trakhanov, M Laurberg, HF Noller - Cell, 2006 - cell.com
Our understanding of the mechanism of protein synthesis has undergone rapid progress in
recent years as a result of low-resolution X-ray and cryo-EM structures of ribosome …

Domain movements of elongation factor eEF2 and the eukaryotic 80S ribosome facilitate tRNA translocation

CMT Spahn, MG Gomez‐Lorenzo, RA Grassucci… - The EMBO …, 2004 - embopress.org
An 11.7‐Å‐resolution cryo‐EM map of the yeast 80S· eEF2 complex in the presence of the
antibiotic sordarin was interpreted in molecular terms, revealing large conformational …